search for: tpos

...5:23:44:710,M3_03,4498,1124 ... Each pos (eg M1_01) is an independent time series. I would like to plot each time series as lines on a single plot and I wondered if there was something more straight forward than I was attempting. I got as far as: fname = 't100.csv' t = read.csv(fname) tpos = split(t, t$pos) plot(tpos[["M1_01"]]$t, type='l') for (p in names(tpos)) { lines(tpos[[p]]$t) } which seems to work but then I got stuck on how to make each line a different colour and figured that there might a be a one liner R command to do what I want. Any tips would...

...package creates nice forest plots for presenting the results of a meta-analysis. These plots can be annotated for e.g. giving names to the columns. E.g. as in the documentation of the package: data(dat.bcg) ### meta-analysis of the log relative risks using a random-effects model res <- rma(ai=tpos, bi=tneg, ci=cpos, di=cneg, data=dat.bcg, measure="RR", slab=paste(author, year, sep=", "), method="REML") forest(res, slab=paste(dat.bcg$author, dat.bcg$year, sep=", "), xlim=c(-16, 6), at=log(c(.05, .25, 1, 4)), atransf=exp,...

...en Hemminger <shemminger@osdl.org> diff -Nru a/include/linux/list.h b/include/linux/list.h --- a/include/linux/list.h 2004-07-28 15:30:04 -07:00 +++ b/include/linux/list.h 2004-07-28 15:30:04 -07:00 @@ -678,6 +678,24 @@ pos && ({ n = pos->next; 1; }) && \ ({ tpos = hlist_entry(pos, typeof(*tpos), member); 1;}); \ pos = n) + +/** + * hlist_for_each_entry_rcu - iterate over rcu list of given type + * @pos: the type * to use as a loop counter. + * @pos: the &struct hlist_node to use as a loop counter. + * @head: the head for your list. + * @member:...

Hello, Is it possible to have two meta-plots in one graph (not par(mfrow=c(2,1))? But somthing like  library(metafor)  library("igraph")    if (interactive()) {     forest(dat.Treat$RR, ci.lb=dat.Treat$lower, ci.ub=dat.Treat$upper, xlab="Relative Risk",slab=dat.Treat$ID,refline=1)     forest(dat.Control$RR, ci.lb=dat.Control$lower, ci.ub=dat.Control$upper, xlab="Relative

..._value (Xapian::valueno valueno, const std::string &value) What's the purpose of this method? Document will related to the terms, but what's the purpose of this? (2) add_posting method will add term to a documents. void add_posting (const std::string &tname, Xapian::termpos tpos, Xapian::termcount wdfinc=1) I noticed that Xapian::TermGenerator has follow method void index_text (const Xapian::Utf8Iterator &itor, Xapian::termcount weight=1, const std::string &prefix="") What's the differences and relationship between these two functions? Tha...

...readLines() in 3.4.3, it returns text (and a warning). In 3.5.0, it gives a warning, but no text. Is this expected behavior or a bug? 3.4.3: > source_file = "1k_annotation.gz" > readfile_con <- gzfile(source_file, "r") > readLines(readfile_con, n = 5) [1] "#chr\tpos\tref\talt\t <truncated output here> Warning message: In readLines(readfile_con, n = 5) : seek on a gzfile connection returned an internal error > close(readfile_con) > sessionInfo() R version 3.4.3 (2017-11-30) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Sier...

Dear R-community, I'm currently trying to assemble a forest plot using the "forest" function from package "metaphor". Works well. Even the regular "main"-argument works for adding a title to the graph. However, I would like to add one top row which explains the nature of the columns. Very much like the usual header in spreadsheet programs. For example:

...* pwdstr Present Working Directory string */ -void rosh_dir(const char *cmdstr, const char *pwdstr) +void rosh_ls(const char *cmdstr, const char *pwdstr) { char filestr[ROSH_PATH_SZ + 1]; - int cmdpos; /* Position within cmdstr */ + char optstr[ROSH_OPT_SZ]; /* Options string */ + int cmdpos, tpos; /* Position within cmdstr, temp position */ + int numargs; /* number of non-option arguments */ + int argpos; /* number of non-option arguments processed */ + int optarr[2]; ROSH_DEBUG("CMD: '%s'\npwd: '%s'\n", cmdstr, pwdstr); /* Initialization */ filestr[0] = 0;...

...t gives a warning, but no text. Is this expected > > behavior or a bug? > > > > 3.4.3: > >> source_file = "1k_annotation.gz" > >> readfile_con <- gzfile(source_file, "r") > >> readLines(readfile_con, n = 5) > > [1] "#chr\tpos\tref\talt\t > > > > <truncated output here> > > > > Warning message: > > In readLines(readfile_con, n = 5) : > > seek on a gzfile connection returned an internal error > > > >> close(readfile_con) > > > >> sessionInfo() >...

Dear R User, Please, I am new to R. I want to overlay density plot for predictive interval pooled result in meta-analysis. http://addictedtor.free.fr/graphiques/graphcode.php?graph=114 Regards Frank Peter

...: 1.5.1 OS: Win2000 Submission from: (NULL) (203.25.148.63) When using read.table to read a data file section by section, I get an error that indicates R is attempting to read more "fields" than exist. The Data file looks like this: ---Start of file tmp.txt----------- Response Types = TPos TNeg FPos FNeg Anti Post MaxO Test ID,Username,Start Date,Mean,Std Dev,Accuracy,SRT1_1,SRT1_1_TYPE,SRT1_2,SRT1_2_TYPE,SRT1_3,SRT1_3_TYPE,SRT1_4,SRT1_4_TYPE,SRT1_5,SRT1_5_TYPE,SRT1_6,SRT1_6_TYPE,SRT1_7,SRT1_7_TYPE,SRT1_8,SRT1_8_TYPE,SRT1_9,SRT1_9_TYPE,SRT1_10,SRT1_10_TYPE,SRT1_11,SRT1_11_TYPE,SRT1...

...irectory string */ -void rosh_dir(const char *cmdstr, const char *pwdstr) +void rosh_ls(const char *cmdstr) { - char filestr[ROSH_PATH_SZ + 1]; - int cmdpos; /* Position within cmdstr */ + char filestr[ROSH_PATH_SZ]; + char optstr[ROSH_OPT_SZ]; /* Options string */ + int cmdpos, tpos; /* Position within cmdstr, temp position */ + int numargs; /* number of non-option arguments */ + int argpos; /* number of non-option arguments processed */ + int optarr[3]; - ROSH_DEBUG("CMD: '%s'\npwd: '%s'\n", cmdstr, pwdstr); + ROSH_DEBUG("CMD...

...t (and a > warning). In 3.5.0, it gives a warning, but no text. Is this expected > behavior or a bug? > > 3.4.3: >> source_file = "1k_annotation.gz" >> readfile_con <- gzfile(source_file, "r") >> readLines(readfile_con, n = 5) > [1] "#chr\tpos\tref\talt\t > > <truncated output here> > > Warning message: > In readLines(readfile_con, n = 5) : > seek on a gzfile connection returned an internal error > >> close(readfile_con) > >> sessionInfo() > R version 3.4.3 (2017-11-30) > Platform: x86_64...

Dear R-experts! I am working on some meta-analysis using the metafor package. I would like to extract values of the confidence intervals of the effect sizes of the single studies from an rma object. Those values are printed out when plotting a forest plot using the forest function on the rma object, however I was not able to locate them. Many thanks for your help! Jokel [[alternative HTML

Hi, I'm experiencing problems when doing phrase searches with adjacent repeated terms. Example: if I search for 'curtain curtain' and there are documents that matches the query, they aren't returned. But, if I search for 'curtain nice curtain' and there are documents that matches this query, it works ok. attached there is a python program that shows the problem. I tried

Hi I have tryed to do the meta-regression in metafor package, but I would like to get the standardized coefficients for each variable, however in command:   Ø  res<-rma.uni (yi, vi, method="REML", mods=~cota+DL+uso+gadiente+idade, data= turbidez)   I just have the coefficients no standardized (estimate) of the multiple regression. What I need to do? Thanks Fernanda Melo

Dear All, As an attempt to highlight the overall pattern in a Forest plot, I would like to "highlight" the area around HR=1. I cannot find any simple tools for painting a grey ribbon between 0.9 and 1.1. Any suggestions? Thank you in advance! Cheers, Patrik [[alternative HTML version deleted]]

Dear R-experts! In a meta-analysis (metafor) I would like to assess the effect of two categorical covariates (A & B) whereas they both have 4 levels. Is my understanding correct that this would require to dummy-code (0,1) each level of each covariate (A & B)? However I am interested in the main-effects and the interaction of these two covariates and the dummy-coding would only allow to

Hello metafor users, I'm using metafor to perform a single-effect summary estimate of the raw proportion of patients experiencing a post-operative complication, and I'm interested in seeing if this proportion differs between the three most commonly used surgical techniques. The software is working as expected, but I would like to double check on the interpretation of my mixed-effect model

I am using metafor to create forest plots. This code gives me the expected plot (setting x axis tick marks): forest(forest$OR, ci.lb=forest$Low, ci.ub=forest$High, at=log(c(.05, .25, 1, 10)), slab=forest$SNP, atransf=exp) As does this (setting colors): forest(forest$OR, ci.lb=forest$Low, ci.ub=forest$High, col=c(1,2,3), slab=forest$SNP, atransf=exp) But if I try to set both 'at' and