Displaying 3 results from an estimated 3 matches for "tped".
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ted
2008 Dec 04
1
setwd and list.files / linux
Hey,
two questions regarding setwd and list.files:
I try to use the function list.files:
>datapath<-'/nfs/home/m/cremer/gaw/data/traws_chrs'
>fl<-list.files(datapath, pattern="\\.tped")
but I get the following error message:
Warning message:
In list.files(datapath, pattern = "\\.tped") :
list.files: '/nfs/home/m/cremer/gaw/data/traws_chrs/' is not a readable directory
> fl
character(0)
The use of setwd also does not work:
> setwd(datapath)
Erro...
2017 Jun 06
1
Files Missing on Client Side; Still available on bricks
...947703 -0500
The only place I see the directory mentioned in the log files are in the rebalance logs. The following piece may provide a clue as to what is going on:
[2017-06-05 20:46:51.752726] E [MSGID: 109010] [dht-rebalance.c:2259:gf_defrag_get_entry] 0-hpcscratch-dht: /dw/SGDP/HGDP00476_chr6.tped gfid not present
[2017-06-05 20:46:51.752742] E [MSGID: 109010] [dht-rebalance.c:2259:gf_defrag_get_entry] 0-hpcscratch-dht: /dw/SGDP/LP6005441-DNA_B08_chr4.tmp gfid not present
[2017-06-05 20:46:51.752773] E [MSGID: 109010] [dht-rebalance.c:2259:gf_defrag_get_entry] 0-hpcscratch-dht: /dw/SGDP/LP60...
2012 Mar 22
0
Thai vignette, cross-compile for Mac OS X, universal/multiarch (Fwd: Mac OS X builds of CelQuantileNorm, vcftools/samtools/tabix, and snpStats)
...pedfile output
recorded verbatim; newly revived to work as a testsuite for input/output of
hapmap/ped files (and flaged and fixed a few bugs introduced in the last few
years). The bug fixes will appear in the upcoming snpMatrix 1.19.0.12, which
hopefully will include some continual work to add read.tped() and read.vcf().
The usual suspects:
- new linux and win32 mono 2.10.8.1 builds with the large heap patch;
- "less buggy" snpStats 1.4.1.1, 1.5.2.1, 1.5.4.1 ;
- snpMatrix124 1.2.4.6, fixes a small bug;
- new BeanSprout manual which have a bit more information about various Genome
St...