Displaying 5 results from an estimated 5 matches for "totables".
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notables
2012 Nov 07
0
Annotation using org.At.tair.db package in R
Iam using R version 2.15 in a linux operating system. I have a matrix
consisting of the gene ids and their specific signal intensity values as
follows( a subset of the whole matrix) :
probes GSM362180 GSM362181 GSM362188 GSM362189 GSM362192
244901 5.094871713 4.626623079 4.554272515 4.748604391 4.759221647
244902 5.194528083 4.985930299 4.817426064 5.151654407 4.838741605
2011 Oct 04
1
Assigning genes to CBS segmented output:
Hi All,
I have an CBS segmentation algorithm output for 10 tumor samples each from 2
different tumors.
Now, I am in an urgent need to assign gene (followed by all genes present)
that belong to a particular segment after I removed all the CNVs from
segment data. The format of the data is:
Sample Chromosome Start End Num_Probes Segment_Mean
Sample1A-TA 1 51598 76187 15
2008 Jul 08
2
list genes w/n a genomic fragment
Hi, is there any package/function in Bioconductor that can do this: if given
the chromosome positions of a fragment, find out all genes within, and with
the information about which strand is the sense strand. And vice versa.
Thanks a lot.
-----
Appreciate your time & attention!
--
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2007 Feb 21
1
Trying to get an apply to work with a list in applying names to tables
I am trying to use apply and a list to supply names
to a set of tables I want to generate. Below is an
example that I hope mimics the larger original
problem.
EXAMPLE
aa <- c( 2,2,1,1,2)
bb <- c(5,6,6,7,4)
aan <- c("yes", "no")
bbn <- c("a", "b", "c", "d")
mynames <- c("abby", "billy")
mylist <-
2011 Sep 13
2
GO & Protein Complex Analysis for Homo sapiens
Dear All,
I need to fetch GO ontologies for Homo sapiens with their mappings to
corresponding Uniprot identifiers. I would be using this information to
compare result from a clustering algorithm with existing protein complexes.
This would be a test to check how the clustering algorithm accurately
captures GO terms with respect to the known protein complexes. Can anyone
suggest a simple workflow