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timedate
2011 Nov 28
1
Running Shell Script with R
...l script to work. I've checked out the
Intro to R Manual and a host of other websites, but I still can't get the
script to work when I submit the job to the cluster.
Here is my main R code:
##Load Libraries
##...
## Load Time Data
Args <- commandArgs(trailingOnly = TRUE);
print(Args);
timeDat <- read.flowSet(files=NULL, path=Args[1]);
save(timeDat,file = Args[2]);
Here is my shell script file
#!/bin/bash
#$ -cwd
#$ -q all.q
R --slave --vanilla --file="/home/jpura/Desktop/FDA_Trial_Data/testscript.R"
--args "/home/jpura/Desktop/FDA_Trial_Data/Experiment_1/"
&qu...