Displaying 10 results from an estimated 10 matches for "tilingfeatureset".
2012 Jun 28
1
Merging listed dataset into one
Hello,
I'm wondering how I can merge two featuresets into one.
My dataset is two sets of microarray data and it looks like followings:
> rawData
$v1
TilingFeatureSet (storageMode: lockedEnvironment)
assayData: 2197815 features, 59 samples
element names: channel1, channel2
protocolData
rowNames: LT290677RU_D1_2011-02-16 LT286300LU_D1_2010-07-24 ...
LT003990RU_D1_2010-11-04 (59 total)
varLabels: filenamesChannel1 filenamesChannel2 dates1 dates2
varM...
2019 Jun 28
2
methods package: A _R_CHECK_LENGTH_1_LOGIC2_=true error
...;conformMethod" in package "methods"
>> Tracing function "conformMethod" in package "methods"
>> Tracing conformMethod(signature, mnames, fnames, f, fdef, definition)
>> step 12,4,3,2
>> List of 3
>> $ signature: Named chr [1:4] "TilingFeatureSet" "ANY" "ANY" "array"
>> ..- attr(*, "names")= chr [1:4] "object" "subset" "target" "value"
>> ..- attr(*, "package")= chr [1:4] "oligoClasses" "methods" "methods&quo...
2019 Jun 27
2
methods package: A _R_CHECK_LENGTH_1_LOGIC2_=true error
...igo")
gives:
Untracing function "conformMethod" in package "methods"
Tracing function "conformMethod" in package "methods"
Tracing conformMethod(signature, mnames, fnames, f, fdef, definition)
step 12,4,3,2
List of 3
$ signature: Named chr [1:4] "TilingFeatureSet" "ANY" "ANY" "array"
..- attr(*, "names")= chr [1:4] "object" "subset" "target" "value"
..- attr(*, "package")= chr [1:4] "oligoClasses" "methods" "methods" "methods...
2019 Jun 28
0
methods package: A _R_CHECK_LENGTH_1_LOGIC2_=true error
...cing function "conformMethod" in package "methods"
> Tracing function "conformMethod" in package "methods"
> Tracing conformMethod(signature, mnames, fnames, f, fdef, definition)
> step 12,4,3,2
> List of 3
> $ signature: Named chr [1:4] "TilingFeatureSet" "ANY" "ANY" "array"
> ..- attr(*, "names")= chr [1:4] "object" "subset" "target" "value"
> ..- attr(*, "package")= chr [1:4] "oligoClasses" "methods" "methods" &qu...
2019 Jun 29
0
methods package: A _R_CHECK_LENGTH_1_LOGIC2_=true error
...ackage "methods"
> >> Tracing function "conformMethod" in package "methods"
> >> Tracing conformMethod(signature, mnames, fnames, f, fdef, definition)
> >> step 12,4,3,2
> >> List of 3
> >> $ signature: Named chr [1:4] "TilingFeatureSet" "ANY" "ANY" "array"
> >> ..- attr(*, "names")= chr [1:4] "object" "subset" "target" "value"
> >> ..- attr(*, "package")= chr [1:4] "oligoClasses" "methods" "m...
2019 Jun 29
2
methods package: A _R_CHECK_LENGTH_1_LOGIC2_=true error
...>> Tracing function "conformMethod" in package "methods"
>> >> Tracing conformMethod(signature, mnames, fnames, f, fdef, definition)
>> >> step 12,4,3,2
>> >> List of 3
>> >> $ signature: Named chr [1:4] "TilingFeatureSet" "ANY" "ANY" "array"
>> >> ..- attr(*, "names")= chr [1:4] "object" "subset" "target" "value"
>> >> ..- attr(*, "package")= chr [1:4] "oligoClasses" "metho...
2019 Jul 04
1
methods package: A _R_CHECK_LENGTH_1_LOGIC2_=true error
...function "conformMethod" in package "methods"
? ? >>> >> Tracing conformMethod(signature, mnames, fnames, f, fdef, definition)
? ? >>> >> step 12,4,3,2
? ? >>> >> List of 3
? ? >>> >> $ signature: Named chr [1:4] "TilingFeatureSet" "ANY" "ANY" "array"
? ? >>> >>? ..- attr(*, "names")= chr [1:4] "object" "subset" "target" "value"
? ? >>> >>? ..- attr(*, "package")= chr [1:4] "oligoClasses" &qu...
2019 Jul 01
1
methods package: A _R_CHECK_LENGTH_1_LOGIC2_=true
...function "conformMethod" in package "methods"
>>> >> Tracing conformMethod(signature, mnames, fnames, f, fdef, definition)
>>> >> step 12,4,3,2
>>> >> List of 3
>>> >> $ signature: Named chr [1:4] "TilingFeatureSet" "ANY" "ANY" "array"
>>> >> ..- attr(*, "names")= chr [1:4] "object" "subset" "target" "value"
>>> >> ..- attr(*, "package")= chr [1:4] "oligoClasses" &qu...
2019 Jun 29
0
methods package: A _R_CHECK_LENGTH_1_LOGIC2_=true error
...function "conformMethod" in package "methods"
>>> >> Tracing conformMethod(signature, mnames, fnames, f, fdef, definition)
>>> >> step 12,4,3,2
>>> >> List of 3
>>> >> $ signature: Named chr [1:4] "TilingFeatureSet" "ANY" "ANY" "array"
>>> >> ..- attr(*, "names")= chr [1:4] "object" "subset" "target" "value"
>>> >> ..- attr(*, "package")= chr [1:4] "oligoClasses" &qu...
2019 Jun 27
2
methods package: A _R_CHECK_LENGTH_1_LOGIC2_=true error
Henrik,
If a minimal reprex is hard to construct, could you perhaps instrument your version of R to include a browser() call at the start of the
else if(!all(signature[omittedSig] == "missing")) {
branch, run the code that triggers the issue for you (and must hit that branch) and tell us what the "signature" and "omittedSig" objects look like at that point?