Displaying 4 results from an estimated 4 matches for "the_user_home".
2017 Jul 03
2
/etc/R/Renviron doesn't set R_LIBS_USER anymore
...n the
"usual R way (install.packages)". And this gets more complicated when we
add a bunch of bioconductor packages, where BioConductor pages often say to
install as
source("https://bioconductor.org/biocLite.R")
biocLite(some_packages)
I've ended up doing
.libPaths(c(the_user_home, .libPaths()))
but this does not look very friendly for new users.
Best,
R.
>
> Dirk
>
> |
> |
> | -Kirill
> |
> | > Dirk
> | >
> |
--
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid
Arzob...
2017 Jul 03
0
/etc/R/Renviron doesn't set R_LIBS_USER anymore
...ual R way (install.packages)". And this gets more complicated when we
| add a bunch of bioconductor packages, where BioConductor pages often say to
| install as
|
| source("https://bioconductor.org/biocLite.R")
| biocLite(some_packages)
|
| I've ended up doing
|
| .libPaths(c(the_user_home, .libPaths()))
|
| but this does not look very friendly for new users.
Easier: Remove one # comment character in /etc/R/Renviron which does the same.
As does setting in file /etc/R/Renviron.site (which the package never
touches).
And local policy can (and should!) still be to set a local group....
2017 Jul 03
1
/etc/R/Renviron doesn't set R_LIBS_USER anymore
...his gets more complicated when we
> | add a bunch of bioconductor packages, where BioConductor pages often say to
> | install as
> |
> | source("https://bioconductor.org/biocLite.R")
> | biocLite(some_packages)
> |
> | I've ended up doing
> |
> | .libPaths(c(the_user_home, .libPaths()))
> |
> | but this does not look very friendly for new users.
>
> Easier: Remove one # comment character in /etc/R/Renviron which does the same.
>
> As does setting in file /etc/R/Renviron.site (which the package never
> touches).
Thanks for reminding me of that....
2017 Jul 02
3
/etc/R/Renviron doesn't set R_LIBS_USER anymore
On 02.07.2017 22:01, Dirk Eddelbuettel wrote:
> On 2 July 2017 at 21:39, Kirill M?ller wrote:
> | Hi
> |
> | An upgrade to R 3.4.1 on Ubuntu removed the default setting of
> | R_LIBS_USER in /etc/R/Renviron. What's the rationale behind this? Thanks.
>
> Pretty much exactly what I told you in person last week :)
>
> - idea is to prefer /usr/local/lib/R/site-library/