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2012 Apr 15
1
R CMD check with non-standard .libPaths
...step #2 into a new library. Once I've
figured out what the missing dependencies are (depMiss), I
install.packages(depMiss,lib=libdir)
Then I run R CMD check as follows.
ss <- suppressWarnings(system(
paste("export R_LIBS=./library; R CMD check",
file.path(tarballdir,tn)),
intern=TRUE))
However, this only seems to work partially. It does prevent the check
from failing with an error that the package doesn't exist: *BUT* when
the examples are actually run, I get results like this (this is from the
'agridat' package, which "Sugg...