Displaying 3 results from an estimated 3 matches for "symbreak".
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symbreaks
2009 Nov 09
0
Bug in gplots::heatmap.2 symbreaks arg default (?)
Hi all,
I think the code to calculate the default value of the symbreaks
argument in the gplots::heatmap.2 function is wrong.
The documentation says symbreaks defaults to true if any negative
values are detected in the data passed in.
The relevant code in the parameter list of this function definition
(gplots 2.7.3) is this:
symbreaks = min(x < 0, na.rm = T...
2016 Apr 18
2
heatmap2 error key
...keysize = 2,
key.xlab = "Log2FC",
key.title = "key",
cexCol=3.0,
cexRow=2,
lwid= c(0.4,1),
lhei = c(0.1, 4),
margins= c(50,80),
symm=F,symkey=F,symbreaks=T, scale="none")
dev.off()
> R.version
_
platform x86_64-apple-darwin13.4.0
arch x86_64
os darwin13.4.0
system x86_64, darwin13.4.0
status
major 3
minor 2.2
year 2015
month 08
day 14
s...
2009 Jul 21
1
problem with heatmap.2 in package gplots generating non-finite breaks
...tval" "revC" "rm"
[53] "rowInd" "rowsep" "RowSideColors" "Rowv"
[57] "scale" "scale01" "sepcolor" "sepwidth"
[61] "sx" "symbreaks" "symkey" "symm"
[65] "tmpbreaks" "trace" "tracecol" "vline"
[69] "x" "xlab" "x.scaled" "x.unscaled"
[73] "ylab" "z...