search for: suppresspackagestartupmessages

summary: e.g., how to replace '<query R for package=package_name>' in the following: for RSERVER in 'foo' 'bar' 'baz' ; do ssh ${RSERVER} '<query R for package=package_name>' done or is there a better way to script checking for an R package? details: For my work I need a few non-standard R packages. I do that work on 2 clusters. One uses

...kage, "data") env <- attachNamespace(ns, pos = pos, dataPath = dataPath, deps)}) 17: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) 18: withCallingHandlers(expr, packageStartupMessage = function(c) invokeRestart("muffleMessage")) 19: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)) 20: doTryCatch(return(expr), name, parentenv, handler) 21: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 22: tryCatchList(expr, classes, parentenv, handlers) 23: tryCatch(expr, error = function(e) { call &l...

...;- loadNamespace(package, c(which.lib.loc, lib.loc)) env <- attachNamespace(ns, pos = pos, deps)}) 14: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) 15: withCallingHandlers(expr, packageStartupMessage = function(c) invokeRestart("muffleMessage")) 16: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)) 17: doTryCatch(return(expr), name, parentenv, handler) 18: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 19: tryCatchList(expr, classes, parentenv, handlers) 20: tryCatch(expr, error = function(e) { call &l...

...ith save="no".. utils::assignInNamespace(".qOrig", base::q, "base") utils::assignInNamespace("q", function(save = "no", ...) base:::.qOrig(save = save, ...), "base") This worked fine until he decide to load the distr package: > suppressPackageStartupMessages(library(distr)) Error: package or namespace load failed for ?distr? in loadNamespace(name): there is no package called ?.GlobalEnv? distr calls setGeneric("q"), which indirectly causes the environment of base::q, .GlobalEnv, to be loaded as a namespace, causing the error. Giving his...

...nt to add two ablines like this abline(h=2400, lty=3, col="lightgrey") abline(h=400, lty=3, col="lightgrey") But doesnt wotk. I alo try to set ylim from 0 to max "Foa"+1000 but I?m not able ?Is it posible? require(latticeExtra) require(ggplot2) require(reshape2) suppressPackageStartupMessages(require(googleVis)) require(quantmod) require(PerformanceAnalytics) require(xtsExtra) require(rCharts) Foa<-as.xts(read.zoo("fa.txt",col.names=c("Date","LAST"), sep="",dec=",", format="%d/%m/%Y")) chartSeries(Foa,theme="white...

Hi, The acrobatics that as.data.frame.factor() is going thru in order to recognize a direct call don't play nice if as.data.frame() is an S4 generic: ??? df <- as.data.frame(factor(11:12)) ??? suppressPackageStartupMessages(library(BiocGenerics)) ??? isGeneric("as.data.frame") ??? # [1] TRUE ??? df <- as.data.frame(factor(11:12)) ??? # Warning message: ??? # In as.data.frame.factor(factor(11:12)) : ??? # ? Direct call of 'as.data.frame.factor()' is deprecated. Use 'as.data.frame.vector...

....list -> all.equal -> all.equal.envRefClass Execution halted Although I don't know if it's helpful -- it appears that packages that include some S4 machinery will effect the outcome of this error, e.g. if we load 'Biobase' first: kevin:~$ R --vanilla --slave -e "suppressPackageStartupMessages(library(Biobase)); all.equal(baseenv(), baseenv())" Error in target$getClass() : object '.refClassDef' not found Calls: all.equal ... all.equal.list -> all.equal -> all.equal.envRefClass -> <Anonymous> Execution halted We were bumping into an error with this...

Dear Russ, I had the same problem in my vignettes and setting both message and warning to FALSE seems to remove all unwanted output: ```{r message=FALSE, warning=FALSE} library("afex") library("ggplot2") library("cowplot") theme_set(theme_grey()) ``` Result: https://cran.r-project.org/web/packages/afex/vignettes/afex_plot_introduction.html Best, Henrik Am Di.,

...lib.loc, package, "data") env <- attachNamespace(ns, pos = pos, dataPath = dataPath, deps)}) 9: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) 10: withCallingHandlers(expr, packageStartupMessage = function(c) invokeRestart("muffleMessage")) 11: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)) 12: doTryCatch(return(expr), name, parentenv, handler) 13: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 14: tryCatchList(expr, classes, parentenv, handlers) 15: tryCatch(expr, error = function(e) { call <- con...

...0700 Herv? Pag?s <hpages.on.github at gmail.com> ?????: > The acrobatics that as.data.frame.factor() is going thru in order to > recognize a direct call don't play nice if as.data.frame() is an S4 > generic: > > ??? df <- as.data.frame(factor(11:12)) > > ??? suppressPackageStartupMessages(library(BiocGenerics)) > ??? isGeneric("as.data.frame") > ??? # [1] TRUE > > ??? df <- as.data.frame(factor(11:12)) > ??? # Warning message: > ??? # In as.data.frame.factor(factor(11:12)) : > ??? # ? Direct call of 'as.data.frame.factor()' is depreca...

Hi Hadley and everyone, here's a patch for ggplot2 that fixes the behavior of opts(legend.position={left,top,bottom}). If you try the following code in an unmodified ggplot2 options(warn = -1) suppressPackageStartupMessages(library("ggplot2")) data <- data.frame( x = c(1, 2, 3, 4, 5, 6), y = c(2, 3, 4, 3, 4, 5), colour = c(TRUE, TRUE, TRUE, FALSE, FALSE, FALSE)) ggplot(data, aes(x = x, y = y, colour = colour)) + geom_line() + opts(title = "title", legend.position = "right&qu...

...kage, "data") env <- attachNamespace(ns, pos = pos, dataPath = dataPath, deps)}) 9: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) 10: withCallingHandlers(expr, packageStartupMessage = function(c) invokeRestart("muffleMessage")) 11: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)) 12: doTryCatch(return(expr), name, parentenv, handler) 13: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 14: tryCatchList(expr, classes, parentenv, handlers) 15: tryCatch(expr, error = function(e) { call &l...

...CRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. Hello, The following code downloads all files in the posted link. suppressPackageStartupMessages({ library(rvest) }) # destination directory, change this at will dest_dir <- "~/Temp" # first get the two subfolders from the Data webpage link <- "http://home.brisnet.org.au/~bgreen/Data/" page <- read_html(link) page %>% html_elements("a") %>%...

...base::q, "base") >> utils::assignInNamespace("q", function(save = "no", ...) >> base:::.qOrig(save = save, ...), "base") >> >> This worked fine until he decide to load the distr package: >> >> > suppressPackageStartupMessages(library(distr)) >> Error: package or namespace load failed for ?distr? in >> loadNamespace(name): >> there is no package called ?.GlobalEnv? >> >> distr calls setGeneric("q"), which indirectly causes the environment >> of base::...

...te. E.g., library() has the 'character.only' argument; if TRUE >> then the package argument is treated as an ordinary argument and not passed >> through substitute(). >> >> myLoader <- function(package, quietly = TRUE) { >> wrapper <- if (quietly) suppressPackageStartupMessages else `{` >> wrapper(library(package = package, character.only=TRUE)) >> } >> >> > lapply(c("MASS","boot"), myLoader, quietly=FALSE) >> [[1]] >> [1] "MASS" "splines" "pryr" "stats"...

...te EnergykWh #> 1 1/14/2016 11.98569 #> 2 1/15/2016 32.56938 #> 3 1/16/2016 21.29181 #> 4 1/17/2016 22.88083 #> 5 1/18/2016 9.05750 2. Package dplyr. First column date is coerced from class "character" to class "Date". Then the grouped sums are computed. suppressPackageStartupMessages( library(dplyr) ) dt1 %>% mutate(date = as.Date(date, "%m/%d/%Y")) %>% summarise(EnergykWh = sum(EnergykWh), .by = date) #> date EnergykWh #> 1 2016-01-14 11.98569 #> 2 2016-01-15 32.56938 #> 3 2016-01-16 21.29181 #> 4 2016-01-17 22.88083 #> 5...

...utils::assignInNamespace(".qOrig", base::q, "base") > utils::assignInNamespace("q", function(save = "no", ...) > base:::.qOrig(save = save, ...), "base") > > This worked fine until he decide to load the distr package: > > > suppressPackageStartupMessages(library(distr)) > Error: package or namespace load failed for ?distr? in > loadNamespace(name): > there is no package called ?.GlobalEnv? > > distr calls setGeneric("q"), which indirectly causes the environment > of base::q, .GlobalEnv, to be loaded as a namespace,...

...ng guide >> http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. > Hello, > > Try the following. > In the 2nd geom_smooth you need a subset of the data not of just one of > its columns. > > > > suppressPackageStartupMessages({ > ? library(tsibble) > ? library(dplyr) > ? library(ggplot2) > ? library(lubridate) > }) > > ggplot(data = w, mapping = aes(date, value)) + > ? geom_smooth(formula = y ~ x, method = "lm", se = FALSE) + > ? geom_point() + > ? geom_smooth( > ??? d...

Hi, is there any way to stop showing all messages which sometimes come while loading a packages? For example let say I want to load fBasics package. So I get following notices: > library(fBasics) Loading required package: MASS Loading required package: timeDate Loading required package: timeSeries Attaching package: 'timeSeries' The following object(s) are masked from

For example, if I call "library(spam)", I would get messages like this Package 'spam' is loaded. Spam version 0.27-0 (2011-08-17). Type demo( spam) for some demos, help( Spam) for an overview of this package. Help for individual functions is optained by adding the suffix '.spam' to the function name, e.g. 'help(chol.spam)'. Attaching package: ?spam? The