search for: suppressmessages

Hi all, I would like to create a function that detects if suppressMessages has been invoked upon running that same function. I was looking through {https://cran.r-project.org/doc/manuals/r-release/R-ints.html}, but I haven't found an answer. I do not understand **how** suppressMessages works. I have not received an answer on SO (https://stackoverflow.com/questions/...

Awesome, this gets the job done. To answer your question: When using C or C++ via Rinside or within a package, those functions do not listen to suppressMessages, e.g. `Rprintf` keeps printing to the console. Since it's common to use wrapper functions in R anyway, they can run `are_messages_suppressed` and pass the information on to an explicit `verbose` argument of the C / C++ function. ----- Original Mail ----- Von: "Ivan Krylov" <krylo...

The suppressMessages and suppressWarnings functions currently suppress all the message or warnings that are generated by the input expression. The ability to suppress only specific messages or warnings is sometimes useful, particularly for cases like file import where there are lots of things that can go wrong. Suppr...

Dear all, running the example by D. Eddebuettel (http://dirk.eddelbuettel.com/blog/2011/04/23/) I get an error message. Specifically, the R code I was taking from the above example is ### BEGIN EXAMPLE ### suppressMessages(require(RcppArmadillo)) suppressMessages(require(Rcpp)) suppressMessages(require(inline)) code <- ' arma::mat coeff = Rcpp::as<arma::mat>(a); arma::mat errors = Rcpp::as<arma::mat>(e); int m = errors.n_rows; int n = errors.n_cols; arma::mat simdata(m,n); simdata.ro...

...------------------------------------------- # update.packages("RODBC") # update.packages("tidyverse") ## ----------------------------------------------------------------------------- ## Libraries ## ----------------------------------------------------------------------------- suppressMessages(require(RODBC)) suppressMessages(require(tidyverse)) suppressMessages(require(parallel)) ## ----------------------------------------------------------------------------- ## CMD: Command for DISPOIN's Directory Acquisition ## ---------------------------------------------------------------------...

I need confint() for glm() to supress the messages "Waiting for profiling to be done..." because they mess up the caching mechanism of pgfSweave (see https://github.com/cameronbracken/pgfSweave/issues/40). I have read the help page of confint(), but I do not know how to get the help page for the glm() version, if any such help page exists. Is there a general way of turning of output

...ay Repeated-measure ANOVA with my data. I have read the "Anova in car: SSPE apparently deficient rank" thread by I'm not sure the within-subject interaction has more degrees of freedom than subjects in my case. I have prepared the following testing script: rm(list = ls()) suppressMessages(require("plyr")) suppressMessages(require(ez)) source.file <- file.path(path.expand("~"), "test-data.csv") data <- read.csv(source.file, stringsAsFactors = TRUE) data$Participant <- as.factor(data$Participant) summary(data)...

...uld be used for this sort of thing. That is already how tryCatch and withCallingHandlers discriminate the conditions to handle. Designing and implementing a condition class hierarchy to support this is indeed the hard/tedious part. Best, luke On Thu, 10 Sep 2015, Richard Cotton wrote: > The suppressMessages and suppressWarnings functions currently suppress > all the message or warnings that are generated by the input > expression. > > The ability to suppress only specific messages or warnings is > sometimes useful, particularly for cases like file import where there > are lots of thi...

...+ geom_smooth(span=0.2,se=FALSE,size=0.7) The messages look like this: geom_smooth: method="auto" and size of largest group is <1000, so using loess. Use 'method = x' to change the smoothing method. There were 15 warnings (use warnings() to see them) I have tried p <- p + suppressMessages(geom_smooth(span=0.2,se=FALSE,size=0.7)) but this does not work. I would like to keep using method="auto" but without any messages. Any ideas on how to suppress the messages when using geom_smooth? Thank you! -- View this message in context: http://r.789695.n4.nabble.com/ggplot2-goem-s...

R CMD check really hates it when my .onLoad() function contains suppressMessages(library(foo)) However, _and for non-public packages not going to CRAN_ I prefer doing this over using explicit Depends or import statements in the NAMESPACE file as the latter do not give me an ability to make the loading less verbose. With the R universe of packages being as vast as at is, a sim...

Hello, Suppose in the following code, PROTECT(sr = R_tryEval( .... )) sr is a RAWSXP vector. I wish to return another RAWSXP starting at position 13 onwards (base=0). I could create another RAWSXP of the correct length and then memcpy the required bytes and length to this new one. However is there a more efficient method? Regards Saptarshi Guha

Dear list, I'm trying to suppress/redirect/squash the output from commands like install.packages, or download.file. The problem is that none of: sink(..., type="message"), sink(..., type="output"), capture.output, suppressMessages are quite doing the trick. Output gets written to the stderr stream, despite any combination of the above suppression commands. According to ?sink: Messages sent to ‘stderr()’ (including those from ‘message’, ‘warning’ and ‘stop’) can be diverted by ‘sink(type = "message")’ (see below)....

...ff25cca379687b86933d730/src/library/base/R/time.R#L31 on.exit(cat("Timing stopped at:", ppt(proc.time() - time), "\n")) This means that as far as I can tell the general way to make sure there is no output from a timed statement is ... tt1 <- capture.output(tt0 <- suppressMessages(suppressWarnings( try(<stuff to try>, silent=TRUE)))) (I know I could/should be using tryCatch() instead of try(), but I don't think it really matters here ... ?) What would people think of a request to change this to message() rather than cat() in...

...lot of numbers depending on the input. This is very annoying because I have to run that function several times and I don't want to show this information. What I want is to disable that display but I don't know how to do it. I've tried it with suppressWarnings ( function (...) ) and suppressMessages ( function (...) ) but It doesn't work, the function() continues printing that information. I tried invisible () too. Furthermore, this function doesn't have a "verbose" parameter. Thus, I can't disable it using a verbose parameter. I'm sure that there must be some pro...

...the data and the code and want to learn how to do this by first simulating David's results and then working it through line by line to make sure I understand what every line of code does and then applying it to my own data. When I run the code however, it breaks on the following line: df <- suppressMessages(join(df_xyll, m_map, type = 'right')) I do not seem to have the join() function. This looks almost SQLish. I have tried ??join and looking on CRAN and a google search but I cannot find this function. Is there a special library that one has to install for this to work? Can anyone help pleas...

...============================================================= --- src/library/tools/R/QC.R (revision 74954) +++ src/library/tools/R/QC.R (working copy) @@ -6430,7 +6430,8 @@ if(basename(f) %in% c("iconv.Rd", "showNonASCII.Rd")) def_enc <- TRUE tmp <- tryCatch(suppressMessages(checkRd(f, encoding = enc, def_enc = def_enc, - macros = macros)), + macros = macros, + stages = c("build", "install", "...

...; > > on.exit(cat("Timing stopped at:", ppt(proc.time() - time), "\n")) > > > This means that as far as I can tell the general way to make sure > > there is no output from a timed statement is ... > > > tt1 <- capture.output(tt0 <- suppressMessages(suppressWarnings( > > try(<stuff to try>, silent=TRUE)))) > > > (I know I could/should be using tryCatch() instead of try(), but I don't > > think it really matters here ... ?) > > > What would people think of a request to change this to messa...

...stderr? If it wrote to stdout, then we could capture its output within an R session when calling sink("stdout.txt", type="output") install.packages("MASS", type="source") sink() As it stands, the stderr messages can't be captured via sink/capture.output/suppressMessages within an R session. Interestingly, the make output goes to stdout, but the R messages go to stderr: # the 'make' output goes to stdout $ R --vanilla CMD INSTALL -l /tmp MASS_7.3-14.tar.gz 2>/dev/null gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/L...

...install.packages('SeuratObject') ## we now remove the Matrix package version 1.5.1 we installed into /usr/local leaving 1.6.0 remove.packages("Matrix") packageVersion("Matrix") ## and we now run a bit of SeuratObject code that is now broken as Csparse_validate is gone suppressMessages(library(SeuratObject)) data('pbmc_small') graph <- pbmc_small[['RNA_snn']] class(graph) getClass('Graph') show(graph) # this fails -- dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org

I would like to turn off all the messages during library(aPackage) or require(aPackage) I tried different commands: invisible, capture.output, sink but none of them is working. For example, loading VGAM, gives a lot of unnecessary messages: > library(VGAM) Attaching package: 'VGAM' The following object(s) are masked from package:splines : bs The