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sumsofsqs
2008 Apr 10
1
adonis (vegan package) and subsetted factors
...wo of
those levels have any records. Then I run:
> adonis(CoastNear[,5:118]~Habitat, data = CoastNear,permutations=1000,
+ method='jaccard')
Call:
adonis(formula = CoastNear[, 5:118] ~ Habitat, data = CoastNear,
permutations = 1000, method = "jaccard")
Df SumsOfSqs MeanSqs F.Model R2 Pr(>F)
Habitat 2.0000000 0.0092966 0.0046483 2.0549327 0.0707 0.005
Residuals 54.0000000 0.1221491 0.0022620 0.9293
Total 56.0000000 0.1314457 1.0000
This appears to be wrong - with only two Habitat level...