Displaying 1 result from an estimated 1 matches for "summaryalign".
2017 Apr 28
1
pairwiseAlignment Improvements
...difference between the two sequences, including substitutions, is not quick nor easy. I suppose that summary displays details of the mismatches, but the variable is of class PairwiseAlignmentsSingleSubjectSummary which has no documented accessors. So, the code to access the information looks bad.
summaryAlign at mismatchSummary[["subject"]]
SubjectPosition Subject Pattern Count Probability
1 2 T A 1 1
2 3 T A 1 1
This could be improved with accessors for end users.
Also, instead of being a data.frame, this w...