search for: subramanian_karthikeyan

Hi All: I am clustering 500 genes using hclust of R. Visualizing cluster membership becomes difficult with so many genes in each cluster...Is there a way of printing the dendrogram in multiple pages so that I can clearly see what is in each cluster? Thanks in advance. Karthi.

My previous question put in a simpler way: How would I pass a value of a variable to a function such as lm(Effect1~Trt*Dose, data = x, contrasts = list(Trt = contr.sum, Dose = contr.sum))? Here, 'Effect' is a column name in my data matrix, and I want "Effect1" to be replaced by "Effect2" and so on (my other column names in the data frame) for successive anova

HI All: Can anyone give me the formulae/steps for calculating the type III sum of squares for an unbalanced 2-way ANOVA design? Eg. we are looking at 8 treatments x 4 doses, with unequal numbers of replications within the groups. I really need the stepwise calculation, as I would try to put it in my own code (possibly in Visual Basic) to automate the task. Thanks very much. Karth.

Is there a way I can combine multiple lines of R commands (see below) into a little code snippet or a program in a text file, and run it in R to do my analysis? sink("mysink.txt") for (......) { code for creating a dataframe from supplied data code for doing anova from selected data } Thanks very much. Karth.