Displaying 1 result from an estimated 1 matches for "stroma_run2".
2009 Aug 24
1
Saving heatmaps as PDFs
...to save heatmaps as PDFs. However, the PDF version of the
heatmaps (Heatmap_CAFvsTNF_run2.pdf) is blurred when compared to its
counterpart, which was saved manually by using the software
"Grab" (Heatmap_CAFvsTNF_run2.tiff).
-----R code--------
sample_output <- "stroma_run2"
filename <- "exp_limma_results_final_probesets_Pbelowpoint05.txt"
# read in data
my.data <- read.delim(filename, sep="\t")
my.dataM <-my.data[,2:ncol(my.data)]
hr <- hclust(as.dist(1-cor(t(my.dataM), method="pearson")),
method="complete&...