search for: strbenac

...ding the packing in an R session and looking at the sessionInfo shows the package name was properly processed. Is this a spurious warning ? I'm using: R version 2.13.0 (2011-04-13) Platform: x86_64-unknown-linux-gnu (64-bit) (actually Ubuntu 10.10) -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...d in my Imports: field, and IRanges in the Suggests: of the DESCRIPTION file (it's require()d elsewhere). I'm trying to avoid putting packages in Depends: , so my package loads fast. Any tips of what I'm not understanding properly ? Thanks. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...t;, "numeric", function(rs, colour = "Blue") { cat(rs*100, colour) }) setMethod("myFun", "character", function(cs, colour = "Red") { cat(cs, colour) }) Thanks for any tips, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

Good day, The use of "rounding" also doesn't make sense. If The number is halfway between two integers, it is rounded to the nearest even integer. > round(2.5) [1] 2 -------------------------------------- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia

...ows with all NAs in them, and it still gave me the same error. Is this a bug in agnes() ? It doesn't seem to fulfil the claim made by its documentation. The matrix I'm using can be obtained here : http://129.94.136.7/file_dump/dario/iMatrix.obj -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...alternative that only returns TRUE for lists. It's also confusing initially that > class(x) [1] "by" > is.list(x) [1] TRUE since there's no explicit class definition for "by" and no mention if it has any superclasses. -------------------------------------- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia

...ganism, seqLen=NULL) } \arguments{ \item{rs}{jjj} \item{organism}{ghi} \item{seqLen}{def} \item{do.warn}{abc} \item{...}{xyz} } \details{ Details. } \value{ Text here. } \author{A Person} \examples{ #See the manual } Thanks, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...ganism, seqLen=NULL) } \arguments{ \item{rs}{jjj} \item{organism}{ghi} \item{seqLen}{def} \item{do.warn}{abc} \item{...}{xyz} } \details{ Details. } \value{ Text here. } \author{A Person} \examples{ #See the manual } Thanks, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

Hello, I have 2 vectors of the same mode and the same contents but I still get FALSE. Any ideas ? > reference <- c(11, 14, 16, 5, 4, 2, 0, 15, 9, 0) > reference [1] 11 14 16 5 4 2 0 15 9 0 > cpgDensity [1] 11 14 16 5 4 2 0 15 9 0 > identical(cpgDensity, reference) [1] FALSE > mode(cpgDensity) [1] "numeric" > mode(reference) [1] "numeric"

...ixCelSet") to make an S3 class be S4 dispatchable on. But R 2.13 wants me to document this class that I don't own: * checking for missing documentation entries ... WARNING Undocumented S4 classes: AffymetrixCelSet Is this truly necessary ? -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...d also be improved, to explain that the resolution is too high or the dimensions are too large. > sessionInfo() R version 3.3.2 Patched (2017-02-07 r72138) Platform: i386-w64-mingw32/i386 (32-bit) Running under: Windows 7 (build 7601) Service Pack 1 -------------------------------------- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia

...ith focusing on is.list() being true after as.list() .. the same we would do with as.numeric() and is.numeric(). Martin > However, it would may be too disruptive to make this change at this point. > Hard to predict. > Michael > On Mon, Jan 29, 2018 at 5:00 PM, Dario Strbenac <dstr7320 at uni.sydney.edu.au> > wrote: >> Good day, >> >> I'd like to suggest the addition of an as.list method for a by object that >> actually returns a list of class "list". This would make it safer to do >> type-ch...

...)" [1] "/dskh/nobackup/biostat/Bioconductor" "/usr/local/lib/R/site-library" [3] "/usr/lib/R/site-library" "/usr/lib/R/library" Is there some other crucial information which I have missed ? -------------------------------------- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia

...the same document, say a PDF, is there a way to flatten all the dot plots and graphics, so that they don't take a long time to load on a slow computer in Adobe Reader, without using external programs outside of R ? Thanks, Dario. ------------------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...ion that uses layout() multiple times and layout those outputs ? Here's a minimal example : myplot <- function() { layout(matrix(1:2, nrow=1), widths = c(1, 1)) plot(1:10) plot(10:1) } layout(matrix(1:2), heights = c(1, 2)) myplot() myplot() -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...ap = FALSE) > table(cIDs) cIDs 0 16671 The matrix of observations can be found at : http://129.94.136.7/file_dump/dario/all.obj I'm using R version 2.13.0 (2011-04-13) on Platform: x86_64-unknown-linux-gnu (64-bit) and have cluster_1.13.3. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...e) ... ... other attached packages: [1] S4Vectors_0.9.34 BiocGenerics_0.17.3 The new library path is being ignored when the package is attempted to be loaded at the end of the installation process. How can the installation be successful ? -------------------------------------- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia

..., that isn't needed in any of my code ? The manual also says "In particular, large packages providing ?only? data for examples or vignettes should be listed in ?Suggests? rather than ?Depends? in order to make lean installations possible." -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...1252 attached base packages: [1] parallel stats graphics grDevices utils datasets methods [8] base other attached packages: [1] snow_0.4-2 loaded via a namespace (and not attached): [1] compiler_3.5.0 tools_3.5.0 yaml_2.1.19 -------------------------------------- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia

Good day, I have been unable to solve this issue. Do you get grainy fonts when running the test case plot(1:10, main = "abcedfghijklmnopqrstuvwxyz", cex.main = 4, cex.lab = 4, cex.axis = 4) What version of libcairo is on your system ? -------------------------------------- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia