search for: strats

OS X R 4.3.3 Colleagues I have created objects using the Surv function in the survival package: > FIT.1 Call: survfit(formula = FORMULA1) n events median 0.95LCL 0.95UCL SUBDATA$ARM=1, SUBDATA[, EXP.STRAT]=0 18 13 345 156 NA SUBDATA$ARM=2, SUBDATA[, EXP.STRAT]=1 13 5 NA 186 NA SUBDATA$ARM=2, SUBDATA[, EXP.STRAT]=2 5

Terry - your example didn't demonstrate the problem because the variable that interacted with strata (zed) was not a factor variable. But I had stated the problem incorrectly. It's not that there are too many strata terms; there are too many non-strata terms when the variable interacting with the stratification factor is a factor variable. Here is a simple example, where I have

Terry - your example didn't demonstrate the problem because the variable that interacted with strata (zed) was not a factor variable. But I had stated the problem incorrectly. It's not that there are too many strata terms; there are too many non-strata terms when the variable interacting with the stratification factor is a factor variable. Here is a simple example, where I have

Hi Dennis, look at the help page for summary.survfit, the Value n.event. G?ran On 2024-05-15 22:41, Dennis Fisher wrote: > OS X > R 4.3.3 > > Colleagues > > I have created objects using the Surv function in the survival package: >> FIT.1 > Call: survfit(formula = FORMULA1) > > n events median 0.95LCL 0.95UCL >

Dear R contributors, I have a problem in selecting in an efficient way, rows of a data frame according to a condition, which is a part of a row name of the table. The data frame is made of 64 rows and 2 columns, but the row names are very long but I need to select them according to a small part of it and perform calculations on the subsets. This is the example: X Y "Unique to

Terry Therneau has been very helpful on r-help but we can't figure out what change in R in the past months made extra columns appear in model.matrix when the terms object is subsetted to remove stratification factors in a Cox model. Terry has changed his logic in the survival package to avoid this issue but he requires generating a larger design matrix then dropping columns. A simple

Thanks a lot, so simple so efficient! I will study more the grep command I did not know. Thanks! Francesca Pancotto > Il giorno 19 ott 2017, alle ore 12:12, Enrico Schumann <es at enricoschumann.net> ha scritto: > > df[grep("strat", row.names(df)), ] [[alternative HTML version deleted]]

Dear Helpers   I have a sample frame and i have sampled from it using three methods and now i want to calculate the statistics but i only get the population parameters.   H <- matrix(rnorm(100, mean=50000, sd=5000)) sampleframe=data.frame(type=c(rep("H",100)),value=c(H)) sampleframe   str=strata(sampleframe,c("type"),size=c(20,), method="srswor")

(Re-)read the discussion of indexing (both `[` and `[[`) and be sure to get clear on the difference between matrices and data frames in the Introduction to R document that comes with R. There are many ways to create numeric vectors, character vectors, and logical vectors that can then be used as indexes, including the straightforward way: df[ c( "Unique to strat ", "Unique

Hi All, I am looking for help in rotating species titles produced using the strat.plot( ) function in the rioja package. This function produces a stratigraphic plot of paleoenvironmental data. Currently the titles of each species are plotted vertically while they are typically plotted at a 45 degree angle in other programs. Does anyone have any idea of how to rotates these titles? Below is an

I have a function with the follow signare: apply.strategy(instr, strat) where instr and strat are both objects of classes instrument and strategy respectively. I want to apply this function to a list that holds objects of the class instrument. Currently I am doing this by explicit looping: for(i in length(instr.list) ) { apply.strategy(instr.list[[i]], my.strat) } Is it possible to

Quoting Francesca PANCOTTO <f.pancotto at unimore.it>: > Dear R contributors, > > I have a problem in selecting in an efficient way, rows of a data > frame according to a condition, > which is a part of a row name of the table. > > The data frame is made of 64 rows and 2 columns, but the row names > are very long but I need to select them according to a small

I have a plot created with strat.plot() from package rioja. When the plot is created with scale.percent=FALSE, each x axes is labeled at 0 and its maximum. However, when scale.percent=TRUE, the x axes are not labeled. I need to use scale.percent=TRUE and I need labels for the x axes. I have been able to add labels to the x axes with mtext but it is very tedious to find the correct

Hi, I have a script that takes a subset of genes on a microarray and tries to fit a coxph model to the expression values for each gene. This seems to work fine but in some cases it produces warnings and/or errors. For example: Error in fitter(X, Y, strats, offset, init, control, weights = weights, : NA/NaN/Inf in foreign function call (arg 6) In addition: Warning message: In fitter(X, Y, strats, offset, init, control, weights = weights, : Ran out of iterations and did not converge In this situation I would like to: 1) Deal with it so that it...

Hello, I'm having a bit of a problem with a plot, and I'm hoping that someone might be able to help. I'm running the R Cocoa Gui v1.12 on OS X 10.4.2, and I'm doing a stacked bar plot. The plot itself is quite simple: barplot(as.matrix(s.strats.in),main="Strategy when strong", col=strat.col) where s.strats.in is a matrix with a number of rows that define the height of each stacked bar. However, ever since I expanded the number of columns from 100 to 500, the borders of the bars are overwhelming the plot (the bars are proportio...

Dear *, I have to perform an ANOVA analysis to study the effects on the performance of some algorithmic components in the design of my algorithm. I have done a full factorial design for the following 5 factors (my response variable is "best"): $ model :'data.frame': 3360 obs. of 6 variables: ..$ best : num [1:3360] 0.108 0.573 0.625 1.057 0.451 ...

Please forgive me if you already received this. I had an e-mail sending glitch this morning. http://cran.r-project.org/src/contrib/checkSummary.html reported an error in Design.trans.Rd * checking Rd files ... ERROR Rd files with syntax errors: /var/mnt/hda3/R.check/r-devel/PKGS/Design/man/Design.trans.Rd: unterminated section 'alias' The .Rd file is attached. It begins

Dear R users, I tried to fit a cox proportional hazard model to get estimation of stratified survival probability. my R code is as follows: cph(Surv(time.sur, status.sur)~ strat(colon[,13])+colon[,18] +colon[,20]+colon[,9], surv=TRUE) Error in if (!length(fname) || !any(fname == zname)) { : missing value where TRUE/FALSE needed Here colon[,13] is the one that I want to stratify and the

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hi, I applied coxph to my matrix of 300 samples and 215 variables and got the following error Error in fitter(X, Y, strats, offset, init, control, weights = weights, : NA/NaN/Inf in foreign function call (arg 6) In addition: Warning message: Ran out of iterations and did not converge in: fitter(X, Y, strats, offset, init, control, weights = weights, 26% of time data is censored and here is the result of densi...