search for: stranded

Hi, I was wondering I'm going about this in the correct way. I need to test if there are coding sequences or exons in hg19 which match a string of 100bp "D" i.e. [A,G or T]. However I'm getting a strange result. I get a hit on chr7, using the 100bp search however when I search with 60bp sequence of "D" I don't get any hits. library("BSgenome")

Hello! I''m looking for assistance EXTENDING an example from the Agile Web Development With Rails book: Composing Data with Aggregation (page 324). I''m trying to map three columns to a single Ruby object. However, unlike the example in the Agile Web Development book, the three columns I want to map into one object come from THREE DIFFERENT models. I want to map the following

Hi List I have a dataframe (~1,200,000 rows deep) and I'd like to conditionally reorder groups of rows in this dataframe. I would like to reorder any rows where the Chr.Strand column contains a '-' but reorder within subsets delineated by the Probe.Set.Name column. # toy example #### library(plyr) negStrandGene <- data.frame(Probe.Set.Name =

...- Sent from the Delta quadrant using Borg technology! Nux! www.nux.ro ----- Original Message ----- > From: "Fred Smith" <fredex at fcshome.stoneham.ma.us> > To: centos at centos.org > Sent: Thursday, 25 August, 2016 02:17:27 > Subject: Re: [CentOS] Gnome weather applet stranded > On Wed, Aug 24, 2016 at 10:22:58PM +0100, Nux! wrote: >> It looks like it was quickly fixed in MATE, hope EPEL moves fast... :) >> >> https://github.com/mate-desktop/libmateweather/issues/30#issuecomment-242190096 >> -- >> Sent from the Delta quadrant using Borg...

Nothing in the second loop of nbd_reader() was ever setting quit; the only way the loop could end was via SEGV for dereferencing NULL or abort() when attempting to write to an invalid fd. Finish the implementation to properly mop up stranded in-flight requests. The testsuite did not exercise the case of quitting nbdkit while a transaction was in flight, but was relying on SIGTERM exiting the entire process before all threads were reaped; otherwise, I might have spotted this sooner. Signed-off-by: Eric Blake <eblake@redhat.com>...

...lta quadrant using Borg technology! Nux! www.nux.ro ----- Original Message ----- > From: "Nux!" <nux at li.nux.ro> > To: "CentOS mailing list" <centos at centos.org> > Sent: Thursday, 25 August, 2016 08:13:00 > Subject: Re: [CentOS] Gnome weather applet stranded > Fred, > > Check here > https://git.gnome.org/browse/libgweather/tree/libgweather/weather-metar.c?h=gnome-2-30 > > -- > Sent from the Delta quadrant using Borg technology! > > Nux! > www.nux.ro > > ----- Original Message ----- >> From: "Fred Smit...

Hi, is there any package/function in Bioconductor that can do this: if given the chromosome positions of a fragment, find out all genes within, and with the information about which strand is the sense strand. And vice versa. Thanks a lot. ----- Appreciate your time & attention! -- View this message in context: http://www.nabble.com/list-genes-w-n-a-genomic-fragment-tp18331452p18331452.html

This group impresses me, so far I have been helped with all my questions within 24 hours. Thanks. Therefore another one. I am used to programs (such as STATA) where observations with missing values that are included in a model are simply ignored in the analysis. So far I have not been able to figure out how to deal with missing values in R and have solved the problem by deleting observations

...a quadrant using Borg technology! Nux! www.nux.ro ----- Original Message ----- > From: "isdtor" <isdtor at gmail.com> > To: "CentOS mailing list" <centos at centos.org> > Sent: Wednesday, 24 August, 2016 15:19:20 > Subject: [CentOS] Gnome weather applet stranded > The Gnome weather report applet has ceased working on CentOS5/6. > http://weather.noaa.gov/ says "This service is no longer available". Are there > any good alternatives? I liked the applet as it allowed the use of a custom > radar map. > > As I just discovered, the...

...a quadrant using Borg technology! Nux! www.nux.ro ----- Original Message ----- > From: "isdtor" <isdtor at gmail.com> > To: "CentOS mailing list" <centos at centos.org> > Sent: Wednesday, 24 August, 2016 15:19:20 > Subject: [CentOS] Gnome weather applet stranded > The Gnome weather report applet has ceased working on CentOS5/6. > http://weather.noaa.gov/ says "This service is no longer available". Are there > any good alternatives? I liked the applet as it allowed the use of a custom > radar map. > > As I just discovered, the...

...; Nux! > www.nux.ro > > ----- Original Message ----- > > From: "Nux!" <nux at li.nux.ro> > > To: "CentOS mailing list" <centos at centos.org> > > Sent: Thursday, 25 August, 2016 08:13:00 > > Subject: Re: [CentOS] Gnome weather applet stranded > > > Fred, > > > > Check here > > https://git.gnome.org/browse/libgweather/tree/libgweather/weather-metar.c?h=gnome-2-30 > > > > -- > > Sent from the Delta quadrant using Borg technology! > > > > Nux! > > www.nux.ro > > >...

Based on some testing it seems to me that if I have a package with a dataset in /data a Sweave vignette in inst/doc (but no associated pdf file) the vignette loads the data in /data through data(dataset) and I do a R CMD build R will try to build the pdf version of the vignette, but will be unable to find the dataset in data because the package is not yet installed. However, if I do

It looks like it was quickly fixed in MATE, hope EPEL moves fast... :) https://github.com/mate-desktop/libmateweather/issues/30#issuecomment-242190096 -- Sent from the Delta quadrant using Borg technology! Nux! www.nux.ro ----- Frank Cox <theatre at melvilletheatre.com> wrote: > On Wed, 24 Aug 2016 16:13:51 +0100 > isdtor wrote: > > > Nux! writes: > > > Hm, this

The Gnome weather report applet has ceased working on CentOS5/6. http://weather.noaa.gov/ says "This service is no longer available". Are there any good alternatives? I liked the applet as it allowed the use of a custom radar map. As I just discovered, the weather functionality of the CentOS6 Gnome clock applet was using the same service.

isdtor wrote: > The Gnome weather report applet has ceased working on CentOS5/6. > http://weather.noaa.gov/ says "This service is no longer available". Are > there any good alternatives? I liked the applet as it allowed the use of a > custom radar map. > > As I just discovered, the weather functionality of the CentOS6 Gnome clock > applet was using the same service.

On Wed, 24 Aug 2016, m.roth at 5-cent.us wrote: > isdtor wrote: >> The Gnome weather report applet has ceased working on CentOS5/6. >> http://weather.noaa.gov/ says "This service is no longer available". Are >> there any good alternatives? I liked the applet as it allowed the use of a >> custom radar map. >> >> As I just discovered, the weather

Nux! writes: > Hm, this is bad. I was relying on this feature heavily. > Let's see if there is a fix. I don't imagine RH will care about this on EL6, but maybe MATE guys could help. The code for the respective applets is quite different. Mate uses weather.com, but I bet the API is different and a fix requires actual coding.

On Wed, August 24, 2016 10:46 am, m.roth at 5-cent.us wrote: > isdtor wrote: >> The Gnome weather report applet has ceased working on CentOS5/6. >> http://weather.noaa.gov/ says "This service is no longer available". Are >> there any good alternatives? I liked the applet as it allowed the use of >> a >> custom radar map. >> >> As I just

On Wed, 24 Aug 2016 16:13:51 +0100 isdtor wrote: > Nux! writes: > > Hm, this is bad. I was relying on this feature heavily. > > Let's see if there is a fix. I don't imagine RH will care about this on > > EL6, but maybe MATE guys could help. > > The code for the respective applets is quite different. Mate uses > weather.com, but I bet the API is different

On 8/24/2016 8:46 AM, m.roth at 5-cent.us wrote: > Had you gone to noaa.gov, and clicked on climate, it appears that they > want to now charge you $3/yr for the service. I'm getting DNS not found errors from anything in NOAA.GOV. anyways, 'climate' refers to historical averages by location/month/week/date. presumably the API involved here was for current weather conditions