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2009 Apr 07
2
Minimum Spanning Tree
Hi all, I'm very new to R and read a few tutorials, however I'm having difficulty trying to figure out how to plot a minimum spanning tree. I have a csv file that contains an n-by-n matrix of distances between strains of bacteria called matrix.csv. Looks like: id,strain1, strain2,strain3 strain1,0,.2,.8 strain2,.3,0,.7 strain3,.4,.6,0 I've been messing around with some information I've found on the web that prints out an mst, however I think it does it with random values, instead of values provided in a dataset (like from my csv file). Here's what I tried looks like:...