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sgrad
2016 Feb 20
2
R Package Installation Ignores libPaths Setting
Good day,
I believe from the documentation that folders in R_LIBS should appear in the output of .libPaths, but they do not. The documentation contains "The library search path is initialized at startup from the environment variable R_LIBS ..."
However,
$ export R_LIBS=/users/stgrad/dario/tmp/
$ Rscript -e ".libPaths()"
[1] "/dskh/nobackup/biostat/Bioconductor" "/usr/local/lib/R/site-library"
[3] "/usr/lib/R/site-library" "/usr/lib/R/library"
Is there some other crucial information which I have missed ?
----...
2016 Feb 20
0
R Package Installation Ignores libPaths Setting
...I believe from the documentation that folders in R_LIBS should appear in the output of .libPaths, but they do not. The documentation contains "The library search path is initialized at startup from the environment variable R_LIBS ..."
>
> However,
>
> $ export R_LIBS=/users/stgrad/dario/tmp/
> $ Rscript -e ".libPaths()"
> [1] "/dskh/nobackup/biostat/Bioconductor" "/usr/local/lib/R/site-library"
> [3] "/usr/lib/R/site-library" "/usr/lib/R/library"
>
> Is there some other crucial information wh...
2016 Feb 18
2
R Package Installation Ignores libPaths Setting
Good day,
If the library path is changed with .libPaths, the command
install.packages("/nb/dario/Biostrings_2.39.9.tar.gz", repos=NULL)
fails with
** testing if installed package can be loaded
Error : package ?S4Vectors? required by ?Biostrings? could not be found
However,
running library(S4Vectors) followed by sessionInfo() after the error shows that the package can indeed be