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2010 Mar 16
0
FW: How to parse a string (by a "new" markup) with R ?
...ATCGTAAGGtCACCAGTTCGATCCTGGTTCGGGGCA"
Str<- ">>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<."
x<-splitSeq(Seq,Str)
x
stem0 stem1 stem2 stem3 stem4
before "" "" "" "" ""
opening "GCCTCGA" "GCTC" "TACGA" "ACCAG" ""
inside "" "AG...
2010 Mar 16
3
How to parse a string (by a "new" markup) with R ?
Hello all,
For some work I am doing on RNA, I want to use R to do string parsing that
(I think) is like a simplistic HTML parsing.
For example, let's say we have the following two variables:
Seq <-
"GCCTCGATAGCTCAGTTGGGAGAGCGTACGACTGAAGATCGTAAGGtCACCAGTTCGATCCTGGTTCGGGGCA"
Str <-