Displaying 3 results from an estimated 3 matches for "spotflag".
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bootflag
2010 Jul 06
2
Could not find createData function
...kages 'citation(pkgname)'.
> library(maanova)
Attaching package: 'maanova'
The following object(s) are masked from 'package:base':
norm
> abf1.raw <- read.madata("gcrmadata.expr.
dat", designfile="design.dat",
+ probeID=1, pmt=2, spotflag=F)
Reading one color array.
Otherwise change arrayType='twoColor' then read the data again
Warning messages:
1: In read.madata("gcrmadata.expr.dat", designfile = "design.dat", :
Assume that the first column is probeid. If you have probeid specify it,
otherwise set ...
2010 Jul 06
0
Error in createData function
...kages 'citation(pkgname)'.
> library(maanova)
Attaching package: 'maanova'
The following object(s) are masked from 'package:base':
norm
> abf1.raw <- read.madata("gcrmadata.expr.
dat", designfile="design.dat",
+ probeID=1, pmt=2, spotflag=F)
Reading one color array.
Otherwise change arrayType='twoColor' then read the data again
Warning messages:
1: In read.madata("gcrmadata.expr.dat", designfile = "design.dat", :
Assume that the first column is probeid. If you have probeid specify it,
otherwise set ...
2007 Nov 13
0
Difficult to set a quiet formula in maanova
..._back_c.txt",sep="\t")
> todos.norm <- vsn2(todos)
> write.table(exprs(todos.norm),"todos.norm.txt",sep="\t")
> library(maanova)
> fabiana.raw <- read.madata("todos.norm.vsn2.maanova.txt", designfile="design.txt", header=TRUE, spotflag=FALSE,CloneID=1,metarow=2, metacol=3, pmt=4)
> fabiana <- createData(fabiana.raw, n.rep=2, avgreps=1, log.trans=FALSE)
> model.full.mix <- makeModel(data=fabiana, formula=~Var+Trat+Time+Sample+Var:Trat+Var:Time+Trat:Time+Var:Trat:Time, random=~Sample)
> summary(model.full.mix)...