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ShortRead with BWA
2010 Apr 27
2
ShortRead with BWA
...example, BWA output). So I tried readAligned with BWAAln <- readAligned(BWAFile, type = "BWA") but then I got error: > BWAAln <- readAligned(BWAFile, type = "BWA") Error: UserArgumentMismatch arugment 'type' had value 'BWA' allowable values: 'SolexaExport' 'SolexaAlign' 'SolexaPrealign' 'SolexaRealign' 'SolexaResult' 'MAQMap' 'MAQMapShort' 'MAQMapview' 'Bowtie' 'SOAP' It looks like ShortRead does not support BWA. Am I right, or what am I doing wrong? Anybody has...