Displaying 2 results from an estimated 2 matches for "snploc".
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snplocs
2007 Oct 30
0
Plotting question: how to plot SNP location data?
...abels=paste(rep("SNP", 20), 1:20), las=2)
axis(2, at=1:4)
mtext("sibling", 2, line=3)
title(main="Specific SNPs in Chr 1")
par(opar)
In addition to having the data for the above colour matrix, I also have
data including the exact locations of the SNPs on a chromosome (snploc).
I would like to plot the SPNs using the colour codes from above (z) and
include the exact locations of each SNP. Is it possible to do that using
the image-function? Below I have tried to solve the problem using the
basic plot function but I cannot include the colors to that plot. How
would that b...
2015 Apr 18
2
truncated warning messages
...aster.UCSC.dm3.masked?,
?BSgenome.Hsapiens.UCSC.hg18.masked?,
?BSgenome.Hsapiens.UCSC.hg19.masked?,
?BSgenome.Mmusculus.UCSC.mm9.masked?,
?BSgenome.Scerevisiae.UCSC.sacCer2?, ?BSgenome.Hsapiens.NCBI.GRCh38?,
?BSgenome.Rnorvegicus.UCSC.rn5?, ?drosophila2probe?, ?hgu95av2probe?,
?hgu95av2cdf?, ?SNPlocs.Hsapiens.dbSNP.20100427?,
?SNPlocs.Hsapiens.dbSNP.20101109?, ?SNPlocs.Hsapiens.dbSNP.20110815?,
?SNPlocs.Hsapiens.dbSNP141.GRCh38?,
?XtraSNPlocs.Hsapiens.dbSNP141.GRCh38?, ?org.Sc.sgd.db?, ?org.Mm.eg.db?,
?org.At.tair.db?, ?hom.Hs.inp.db?, ?GO.db?,
?TxDb.Hsapiens.UCSC.hg18.knownGene?,
?TxDb....