Displaying 2 results from an estimated 2 matches for "snp11".
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snp1
2011 Mar 10
1
snp-chip table
Dear R helpers
I have a table and i need to make new table
table1:
sire snp1 snp2 snp3 snp4 snp5 snp6 snp7 snp8 snp9 snp10
snp11 snp12 snp13 snp14 snp15 8877 -1 -1 -1 -1 0 0 -1 -1 -1 0 1 1 1 -1 -1
7765 1 1 1 0 0 0 -1 1 1 1 0 0 0 1 0 8766 1 1 -1 0 -1 -1 0 -1 0 -1 -1 -1 0 1
0 6756 0 1 0 -1 1 -1 -1 0 0 0 0 -1 0 1 1 5644 -1 0 1 -1 0 0 0 0 -1 -1 0 0 0
0 1
I have table2
sire snp1 snp2 snp3 snp4 snp5 snp6 snp7 snp8 snp9 snp10...
2009 Sep 01
1
permutation and reshuffling
...p that will
randomly simulate it for 10000 times *(permutation)*. I also need to find
how I keep the information (p value for each SNP) gathered for all the 10000
iterations.
My data set looks like this (n=500):
Individual #
Phenotype
SNP1
SNP2
SNP3
SNP4
SNP5
SNP6
SNP7
SNP8
SNP9
SNP10
SNP11
SNP12
1
0
T
T
G
G
A
C
G
T
A
A
T
C
2
1
A
T
C
G
A
C
G
T
A
G
T
C
Many thanks,
Jonathan
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