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2007 Aug 14
0
Limma - 2x2 factorial design matrix
...ign is almost the same as the limmaGUI work example: Weaver Data set. I would like to look at the effect of time, treatment and interaction. I have tried to follow the limmaGUI help example to construct the design matrix. The target file and design matrix are as follow: (C - control, M - treated) SlideNumberFileNameCy3Cy5 M6.C6tss37-normnew.gprM6C6 C6.C9tss5-new.gprC6C9 C9.M9tss9-new.gprC9M9 M9.M6tss24-normnew.gprM9M6 C6.M6tss31-normnew.gprC6M6 M6.M9tss2-normnew.gprM6M9 M9.C9tss12-normnew.gprM9C9 C9.C6tss25-normnew.gprC9C6 SlideNumberTreatmentTimeInteraction M6.C6-100 C6.C9010 C9.M9101 M9.M60-1-1 C6.M6100 M6.M901...