search for: skylineconfig

...quot;tibble" while > configuration is an "R6" class. > But I also have parametrized reports where I pass R reference classes > as arguments. > > This is the Rmd yaml params part corresponding to the error message. > > params: > configuration: !r get(data(skylineconfig)) > data: !r get(data(sample_analysis)) > > Might the R6 class which I pass to configuration the source of the > problem here? I have heard somewhere that R6 uses environments to > implemented some features. > > > > There is also a further problem I am encounterin...

...gmail.com> wrote: > On 09/07/2018 8:49 AM, Witold E Wolski wrote: >> >> Dear Duncan, >> >> Following your advice (Thank you for it) I did include into the vignettes >> params: >> configuration: !r get(data(sample_analysis)) >> data: !r get(data(skylineconfig)) >> >> And everything seemed (see below) to work fine. >> devtools::build_vignettes() builds the vignettes. >> >> Runs with NO error. By this the .Rmd file, html file and corresponding >> .R files is being placed into the inst/doc directory. >> >> Ho...

...llo, Thank you for the questions as well as remaining me of the default parameters in the yaml session. Indeed this seems to be the solution. But how would I assign package data as a default parameter? So originally I thought to render the markdown with : <code> data(sample_analysis) data(skylineconfig) x <- rmarkdown::render("report.Rmd", output_format = "html_document", params = list(data = sample_analysis, configuration = skylineconfig),envir = new.env()) <code> I do not think I can write: params: config...

Dear Duncan, Following your advice (Thank you for it) I did include into the vignettes params: configuration: !r get(data(sample_analysis)) data: !r get(data(skylineconfig)) And everything seemed (see below) to work fine. devtools::build_vignettes() builds the vignettes. Runs with NO error. By this the .Rmd file, html file and corresponding .R files is being placed into the inst/doc directory. However, when I did want to check the package by running devtools::chec...

...luable questions. sample_analysis is a "tibble" while configuration is an "R6" class. But I also have parametrized reports where I pass R reference classes as arguments. This is the Rmd yaml params part corresponding to the error message. params: configuration: !r get(data(skylineconfig)) data: !r get(data(sample_analysis)) Might the R6 class which I pass to configuration the source of the problem here? I have heard somewhere that R6 uses environments to implemented some features. There is also a further problem I am encountering reproducible when running devtools::install(...

...ote and eval, as well as to use the package parameter in data made it work, with all devtools::install,check,build and build_vignettes as well as with R CMD ... etc. But most importantly it also still works with: rmarkdown::render("vignettes/tr_srm_summary.Rmd", params=list(configuration=skylineconfig, data=sample_analysis )) THANK YOU. This is how my vignette header looks (see below) and it works. --- title: "Titel" author: "WEW at FGCZ.ETHZ.CH" date: "`r Sys.Date()`" output: pdf_document: default html_document: default params: configuration: !r quote(...

On 09/07/2018 8:49 AM, Witold E Wolski wrote: > Dear Duncan, > > Following your advice (Thank you for it) I did include into the vignettes > params: > configuration: !r get(data(sample_analysis)) > data: !r get(data(skylineconfig)) > > And everything seemed (see below) to work fine. > devtools::build_vignettes() builds the vignettes. > > Runs with NO error. By this the .Rmd file, html file and corresponding > .R files is being placed into the inst/doc directory. > > However, when I did want to che...

...ning me of the default > parameters in the yaml session. > Indeed this seems to be the solution. > > > But how would I assign package data as a default parameter? > So originally I thought to render the markdown with : > > <code> > data(sample_analysis) > data(skylineconfig) > x <- rmarkdown::render("report.Rmd", output_format = "html_document", > params = list(data = sample_analysis, > configuration = > skylineconfig),envir = new.env()) > <code> > > I do not...

Hello, I have a package which includes some parameterized r-markdown report which I would also like to build as package vignettes. Is there a way to run the parameterized vignette creation with the package build or package check? Thank you -- Witold Eryk Wolski