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...x (example.tex LaTeX2e <2005/12/01> Babel <v3.8g> and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, french, ukenglish, loaded. (C:\texmf\tex\latex\base\article.cls Document Class: article 2005/09/16 v1.4f Standard LaTeX document class (C:\texmf\tex\latex\base\size12.clo File: size12.clo 2005/09/16 v1.4f Standard LaTeX file (size option) ) \c at part=\count79 \c at section=\count80 \c at subsection=\count81 \c at subsubsection=\count82 \c at paragraph=\count83 \c at subparagraph=\count84 \c at figure=\count85 \c at table=\count86 \abovecaptionskip=\skip41 \belo...

In the process of updating R to R 2.7 alpha or R 2.7 beta for the BioConductor 2.2 builds on Windows, I have hit a snag because the BioC build system has long path names (e.g. D:\biocbld\bbs-2.2-bioc\R) and these path names are not resolving properly by MiKTeX 2.7 during vignette construction. Take, for example, the attached vignette from Biobase, Bioconductor.Rnw. I have built R from source