search for: single_module

..._NAMESPACE -I/Users/howarth/xplor-nih-2.27/vmd/ -I/Users/howarth/xplor-nih-2.27/arch/Darwin_11_x86_64/include -I/Users/howarth/xplor-nih-2.27/CDSlib -I/Users/howarth/xplor-nih-2.27/common de-g++46 -dynamiclib -fdefault-integer-8 -O3 -ffast-math -funroll-loops -g -flat_namespace -undefined suppress -single_module dpApi.o vmd.o vmdInter.o tclStream.o dpStream.o ssStream.o publicVMDInter.o thread.o -o libvmd.dylib -lcrypto collect2: ld terminated with signal 11 [Segmentation fault: 11] make[2]: *** [libvmd.dylib] Error 1 make[1]: *** [lib] Error 2 make: *** [vmd] Error 2 at /usr/bin/ld -dynamic -dylib -a...

...- i386 gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -c caret.c -o caret.o gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o caret.so caret.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Resources/library/caret/libs/i386 *** arch - x86_64 gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.f...

...brary/Frameworks/R.framework/Resources/include/i386 -msse3 -fPIC -g -O2 -march=nocona -c init.c -o init.o gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mxFinance.so init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning, duplicate dylib /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libgcc_s.1.dylib ** arch - ppc gcc -arch ppc -isysroot /Developer/SDKs/Ma...

...o compile my file.c to make file.so, with the command : R CMD SHLIB foo.c return the message : gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o foo.so foo.o -F/Library/Frameworks/R.framework/.. -framework R /usr/bin/libtool: for architecture cputype (16777223) cpusubtype (3) object: /usr/local/lib/libgcc_s.10.4.dylib malformed object (unknown load command 4) make: *** [foo.so] Error 1 Can...

...n/libtool: file: mvndstpack.o is not an object file (not allowed in a library) after R outputs (sorry... not sure if this is useful information or not) gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mhroc_prop.so mhroc_prop.o mvndstpack.o -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRlapack -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRblas -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.0 -lgfortran -lgcc_s.10.4 -lSystemStub...

...o gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -c lqs.c -o lqs.o gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o MASS.so MASS.o lqs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/...

...l...I'm not sure it will even speed things up but thought I would try... pnmath failed: ... gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx- version-min=10.4 -std=gnu99 -dynamiclib -Wl,- headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/ lib -o pnmath.so bd0.o beta.o chebyshev.o choose.o d1mach.o dbeta.o dbinom.o dcauchy.o dchisq.o dexp.o df.o dgamma.o dgeom.o dhyper.o dlnorm.o dlogis.o dnbeta.o dnbinom.o dnchisq.o dnf.o dnorm.o dnt.o dpois.o dt.o dunif.o dweibull.o fmax2.o fmin2.o ft...

...ibrary/Frameworks/R.framework/Resources/include/i386 -msse3 -fPIC -g -O2 -march=nocona -c McDonaldHW3.c -o McDonaldHW3.o gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o McDonaldHW3.so McDonaldHW3.o -F/Library/Frameworks/R.framework/.. -framework R ld: library not found for -ldylib1.10.5.o collect2: ld returned 1 exit status make: *** [McDonaldHW3.so] Error 1 McDonaldHW3.c is the code I am trying to compile. It work...

...ibrary/Frameworks/R.framework/Resources/include/i386 -msse3 -fPIC -g -O2 -march=nocona -c McDonaldHW3.c -o McDonaldHW3.o gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o McDonaldHW3.so McDonaldHW3.o -F/Library/Frameworks/R.framework/.. -framework R ld: library not found for -ldylib1.10.5.o collect2: ld returned 1 exit status make: *** [McDonaldHW3.so] Error 1 McDonaldHW3.c is the code I am trying to compile. It work...

...mework/Resources/include -I/Library/Frameworks/R.framework/ Resources/include/x86_64 -I/usr/local/include -I/usr/local/include - Wall -O0 -g -p -pg -fPIC -g -O2 -c core.c -o core.o gcc -arch x86_64 -O3 -g -p -std=gnu99 -dynamiclib -Wl,- headerpad_max_install_names -undefined dynamic_lookup -single_module - multiply_defined suppress -L/usr/local/lib -o core.so core.o -L/usr/ local/lib -lgsl -F/Library/Frameworks/R.framework/.. -framework R - Wl,-framework -Wl,CoreFoundation I am running R 2.7.1 on a Mac Pro (Intel-based) with OS X 10.5.5. My problem is that, for debugging purposes, I would lik...

...lems building R-3.2.4 on Mac OS X El Capitan somehow related to libiconv. I personally don't have any problems on either of my Macs. I'm hoping thie make log might trigger something in the readers of this list: gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/tools/libs installing 'sysdata.rda' Warning mes...

...an for Lion and configure options: ./configure --with-libintl-prefix=/sw --enable-R-shlib (this last option necessary to further install the Rpy Python package) I got the following unreduced compilation error: gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o -L../../../../lib -lR -dylib_file libRblas.dylib:../../../../lib/libRblas.dylib -lintl -Wl,-framework -Wl,CoreFoundation make[6]: `Makedeps' is up to date. mkdir ../../../../library/tools/libs...

...IB bar.f' in the terminal. This created files .o and so of the same name. Got the following output in the terminal : R CMD SHLIB bar.f gfortran -arch x86_64 -fPIC -g -O2 -c bar.f -o bar.o gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bar.so bar.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation 2. Tried to dynamically load the code. In the R console, typed > dyn.load("~/Documents/Marietravail/articles/MRTspatial/SIMSSD...

...ork/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c fifrt.c -o fifrt.o gfortran-4.0 -arch ppc -fPIC -g -O2 -c fthrt.f -o fthrt.o gcc-4.0 -arch ppc -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o roots.so fifrt.o fthrt.o -lgfortran -lgcc_s -lSystemStubs -lmx -lSystem -L/Library/Frameworks/R.framework/Resources/lib/ppc -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/ppc/libRblas.dy lib /usr/bin/libtool: unknown opti...

...c rm -f libmseed.a ar -csq libmseed.a fileutils.o genutils.o gswap.o lmplatform.o lookup.o msrutils.o pack.o packdata.o traceutils.o tracelist.o parseutils.o unpack.o unpackdata.o selection.o logging.o gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o seismic.so parseMiniSEED.o -Llibmseed -lmseed -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: ignoring file libmseed/libmseed.a, file was built for archive which is not the architecture being linked (i38...

...note: 'JNI_CreateJavaVM' has* * been explicitly marked deprecated here* *_JNI_IMPORT_OR_EXPORT_ __attribute__((deprecated)) jint JNICALL* * ^* *1 warning generated.* *clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o conftest.so conftest.o -framework JavaVM -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation* *JAVA_HOME : /Library/Java/JavaVirtualMachines/jdk-9.jdk/Contents/Ho...

...gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -c haz.c -o haz.o gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Survomatic.so haz.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: /Library/Frameworks/R.framework/../R.framework/R load command 17 unknown cmd field /usr/bin/libtool: internal link edit command failed make:...

...TempWrapC.cpp -Wall -l covmodel.h -l util.h Everything works fine since, for mistake, i paste in the terminal the content of the r-script. Now, when i try to compile, i received the following error: llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o SpTempWrapC.so SpTempWrapC.o -Wall -l covmodel.h -l util.h -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation covmodel.h:15:20: error: iostream: No such file or directory covmodel.h:16:18: error: string...

...nd produced the same error message.) chad-r-bhattis-computer:~/MyR/Examples/Fortran/Test1 chadrbhatti$ R CMD SHLIB two.f gfortran -arch i386 -fPIC -g -O2 -c two.f -o two.o gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o two.so two.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation /usr/bin/libtool: for architecture cputype (16777223) cpusubtype (3) object: /usr/local/lib/libgfortran.dylib malformed object (unknown load co...

...-I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -g -O2 -I/sw/include-I/usr/local/include -fPIC -g -O2 -c sobel.c -o sobel.o g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rimage.so equalize.o fftw_access_func.o freqfilters.o interface.o jpegio.o laplacian.o matrix.o smooth.o sobel.o -L/sw/lib -ljpeg -lfftw -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: /Library/Frameworks/R.frame...