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2004 Jan 15
1
random effects with lme() -- comparison with lm()
...t model. Could someone explain to me why lme() still gives two standard deviation estimates? I would expect lme() to return either: a) an error or a warning for having an unidentifiable model; b) only one standard deviation estimate. Thank you for your time. Jerome Asselin > library(nlme) > simdat <- data.frame(A=1:4,Y=c(23,43,11,34)) > simdat A Y 1 1 23 2 2 43 3 3 11 4 4 34 > lme(Y~1,data=simdat,random=~1|A) <...snip...> Random effects: Formula: ~1 | A (Intercept) Residual StdDev: 12.96007 4.860027 <...snip...> > summary(lm(Y~1,data=simdat))$sigma [1]...
2006 Apr 18
2
Unfound objects in function
...q (0, max.r, length = 100), correction = "trans") diff <- sum (Ki$theo - Ki$trans) i <- i + 0.1 if (i > max.r) stop ("no suitable kernel found within 0.2 to max.r") } if (abs (olddiff) > abs (diff)) return (smo) else return (oldsmo) } data (simdat) test <- kernelEst (simdat) Error in while (diff > 0) { : missing value where TRUE/FALSE needed > version _ platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major 2 minor...
2012 May 17
1
oldlogspline probabilities
.... I know I can just use the proportion of actual hits, but am curious to compare this to an estimate from a density estimation. Unfortunately when using poldlogspline, this probability is always=0 (simulated data example is below). How can this be, given that the density is highest at area=0? > simdat<-c(rep(0,8),rexp(92)) > myspline<-oldlogspline(simdat,lbound=0) > poldlogspline(fit=myspline, q=0) [1] 0 Any help to work out the probability of an area value in my distribution = 0 would be appreciated Terry Beutel Agri-Science Queensland [[alternative HTML version deleted]]
2017 Jul 06
1
Convert date to continuous variable in R
...want the axis on the top to look like, but here's what I'd be likely to do: > > ## note, correction to format; in your example data year comes last > LAI_simulation$Date <- as.Date( LAI_simulation$Date, '%m/%d/%Y') > > plot(LAI~Date, data=LAI_simulation) > > simdate <- as.numeric( LAI_simulation$Date - as.Date('2009-10-7') ) > ## or > simdate <- difftime( LAI_simulation$Date, as.Date('2009-10-7') ) > > ## then > axis(3, pretty(simdate) ) > > > Converting LAI_simulation$Date to numeric, and then applying axis.Date(...