search for: shlib_libadd

...=gnu99 -I/usr/local/R/R-3.0.2-build/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c MASS.c -o MASS.o gcc -std=gnu99 -I/usr/local/R/R-3.0.2-build/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lqs.c -o lqs.o gcc -std=gnu99 -shared -L/usr/local/lib -o MASSSHLIB_EXT MASS.o lqs.o SHLIB_LIBADD gcc: error: SHLIB_LIBADD: No such file or directory make[3]: *** [MASSSHLIB_EXT] Error 1 make[3]: Leaving directory `/tmp/Rtmpz2fzbC/R.INSTALL1ae62f487212/MASS/src' ERROR: compilation failed for package 'MASS' * removing '/usr/local/R/R-3.0.2-build/library/MASS' make[2]: *** [MA...

Dear R-list people, I asked a similar question a few hours before. I will try to be more specific. We like to add the GSL library to the file SHLIB in order to make it possible to run the C code using GSL functions from R. We read that the path to the libgsl.a should be added to the line shlib_libadd=' ' in the file SHLIB but it does not work on our system. Dyn.load fails with error "referenced symbol <symbolname> not found". What is wrong? We will much appreciate any help on this. We are using R-1.9.1 on Unix. [[alternative HTML version deleted]]

...to the file SHLIB in order to > > > make it possible to run the C code using GSL functions from R. We read > > > > Read where? It's incorrect information and only used for Fortran linking. > > > > > that the path to the libgsl.a should be added to the line shlib_libadd=' > > > ' in the file SHLIB but it does not work on our system. Dyn.load fails > > > with error "referenced symbol <symbolname> not found". What is wrong? > > > We will much appreciate any help on this. > > > > > > We are using R-...

I am building from source on RHEL 4 and have run into a problem while running "make check": running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1 make[3]: Leaving directory `/opt/R/R-2.9.1/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/opt/R/R-2.9.1/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving

> On 23 Nov 2015, at 22:30 , aixtools <aixtools at gmail.com> wrote: > >> >> ./configure --enable-maintainer-mode ... Two things here - possibly irrelevant, but I'd avoid building in the source directory. (mkdir ../BUILD ; cd ../BUILD; ../R/configure) - don't turn on mantainer mode. You are not a maintainer, and if you want to play at being one, I think you

...he SHLIB file is the same, but some difference in /usr/local/lib/R/etc/Makeconf: SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = g++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = .so SHLIB_FCLD = g77 SHLIB_FCLDFLAGS = -shared SHLIB_FFLAGS = SHLIB_LD = gcc -std=gnu99 SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) what should I do? thanks, xinan

...{wl}-bexpall" fi - shlib_ldflags="${wl}-brtl ${wl}-G ${wl}-bexpall ${wl}-bnoentry -lc" + ## MAMF: This black magic is clearly not working, removed from main_ldflags to be consistent + shlib_ldflags="${wl}-brtl ${wl}-G ${wl}-bexpall ${wl}-bnoentry" SHLIB_LIBADD="\$(LIBM)" shlib_cxxldflags="${shlib_ldflags}" if test "${GCC}" = yes; then This removes most of the Duplicate symbol messages, although there are still several coming from -lR being included during the build of the shared libraries (.so files). Anothe...

Hi, I am trying to use the R/C interface on a Unix system that unfortunately does not have the gnu C compiler and am having trouble accessing the math functions from math.h. To compile a C program with math functions on this system, the following command is used (and the order is important: the /usr/lib/libm.a statement must come at the end of the command): "cc program.c

...else - main_ldflags="${wl}-brtl ${wl}-bexpall -lc" + main_ldflags="${wl}-brtl ${wl}-bmaxdata:0xd0000000/dsa -lc" fi - shlib_ldflags="${wl}-brtl ${wl}-G ${wl}-bexpall ${wl}-bnoentry -lc" + shlib_ldflags="${wl}-G ${wl}-bnoentry -lc" SHLIB_LIBADD="\$(LIBM)" shlib_cxxldflags="${shlib_ldflags}" if test "${GCC}" = yes; then diff -ru R-3.2.3.orig/src/include/Defn.h R-3.2.3/src/include/Defn.h --- R-3.2.3.orig/src/include/Defn.h 2015-08-25 22:15:24 +0000 +++ R-3.2.3/src/include/Defn.h 2015-12-16 10:5...

...-lR LIBS = -L/usr/local/lib -lz -lreadline -ldl -lncurses -lm LIBPATHS = -L/usr/local/lib LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = c++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = so SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -- Jonathan Q. Li, PhD Agilent Technologies Laboratory Palo Alto, California, USA -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Sen...

...-lR LIBS = -L/usr/local/lib -lz -lreadline -ldl -lncurses -lm LIBPATHS = -L/usr/local/lib LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = c++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = so SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -- Jonathan Q. Li, PhD Agilent Technologies Laboratory Palo Alto, California, USA -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Sen...

Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o

...gt; fi > - shlib_ldflags="${wl}-brtl ${wl}-G ${wl}-bexpall ${wl}-bnoentry -lc" > + ## MAMF: This black magic is clearly not working, removed from main_ldflags to be consistent > + shlib_ldflags="${wl}-brtl ${wl}-G ${wl}-bexpall ${wl}-bnoentry" > SHLIB_LIBADD="\$(LIBM)" > shlib_cxxldflags="${shlib_ldflags}" > if test "${GCC}" = yes; then > > This removes most of the Duplicate symbol messages, although there are still several coming from -lR being included > during the build of the shared libraries...

...gs="${wl}-brtl ${wl}-bexpall -lc" > + main_ldflags="${wl}-brtl ${wl}-bmaxdata:0xd0000000/dsa -lc" > fi > - shlib_ldflags="${wl}-brtl ${wl}-G ${wl}-bexpall ${wl}-bnoentry -lc" > + shlib_ldflags="${wl}-G ${wl}-bnoentry -lc" > SHLIB_LIBADD="\$(LIBM)" > shlib_cxxldflags="${shlib_ldflags}" > if test "${GCC}" = yes; then > diff -ru R-3.2.3.orig/src/include/Defn.h R-3.2.3/src/include/Defn.h > --- R-3.2.3.orig/src/include/Defn.h 2015-08-25 22:15:24 +0000 > +++ R-3.2.3/src/include/...

...- main_ldflags="${wl}-brtl ${wl}-bexpall -lc" + main_ldflags="${wl}-brtl ${wl}-bmaxdata:0xd0000000/dsa -lc" fi - shlib_ldflags="${wl}-brtl ${wl}-G ${wl}-bexpall ${wl}-bnoentry -lc" + shlib_ldflags="${wl}-G ${wl}-bnoentry -lc" SHLIB_LIBADD="\$(LIBM)" shlib_cxxldflags="${shlib_ldflags}" if test "${GCC}" = yes; then diff -ru R-3.2.3.dist/share/make/basepkg.mk R-3.2.3/share/make/basepkg.mk --- R-3.2.3.dist/share/make/basepkg.mk 2015-03-18 23:04:12.000000000 +0000 +++ R-3.2.3/share/make/basepk...

I have been struggling with this error message - and think I finally understand it's context. Start Line by line debugging shows me the function works: ... > saveRDS(val, mapfile) > val $variables $variables$IANA_HTTP_status_code_db [1] 0 1256 $variables$IANA_URI_scheme_db [1] 1256 3458 $variables$table_of_HTTP_status_codes [1] 4714 830 $references named list() $compressed

...AKE='' SHELL='/bin/sh' SHLIB_CFLAGS='' SHLIB_CXXFLAGS='' SHLIB_CXXLD='' SHLIB_CXXLDFLAGS='' SHLIB_EXT='' SHLIB_FCD='' SHLIB_FCLD='' SHLIB_FCLDFLAGS='' SHLIB_FFLAGS='' SHLIB_LD='' SHLIB_LDFLAGS='' SHLIB_LIBADD='' STRIP='' SUPPORT_MBCS='' SUPPORT_UTF8='' TAR='tar' TCLTK_CPPFLAGS='' TCLTK_LIBS='' TCL_CONFIG='' TEX='false' TEXI2DVI='false' TIFF_LIBS='' TK_CONFIG='' USE_EXPORTFILES_FALSE='' USE_EXPORTFILES...

...#39;' R_ZIPCMD='/usr/bin/zip' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' SHLIB_CFLAGS='' SHLIB_CXXFLAGS='' SHLIB_CXXLD='' SHLIB_CXXLDFLAGS='' SHLIB_EXT='' SHLIB_FFLAGS='' SHLIB_LD='' SHLIB_LDFLAGS='' SHLIB_LIBADD='' STRIP='strip' TAR='tar' TCLTK_CPPFLAGS='' TCLTK_LIBS='' TCL_CONFIG='' TEX='false' TK_CONFIG='' USE_EXPORTFILES_FALSE='' USE_EXPORTFILES_TRUE='' USE_EXTERNAL_BLAS_FALSE='' USE_EXTERNAL_BLAS_TRUE='' USE...

...9;' R_XTRA_LIBS='' R_ZIPCMD='/usr/bin/zip' SET_MAKE='' SHELL='/bin/bash' SHLIB_CFLAGS='' SHLIB_CXXFLAGS='' SHLIB_CXXLD='' SHLIB_CXXLDFLAGS='' SHLIB_EXT='' SHLIB_FFLAGS='' SHLIB_LD='' SHLIB_LDFLAGS='' SHLIB_LIBADD='' STRIP='strip' TAR='tar' TCLTK_CPPFLAGS='' TCLTK_LIBS='' TCL_CONFIG='' TEX='/usr/local/IT/bin/tex' TK_CONFIG='' USE_EXPORTFILE_FALSE='' USE_EXPORTFILE_TRUE='' USE_EXTERNAL_BLAS_FALSE='' USE_EXTERNAL_BLAS_TRUE=...