search for: shlib_ld

...nd lapack using the switched ( --with-blas="- lpthread -latlas -lfptf77blas" --with-lapack="-llapack -lcblas" ). (( http://cran.r-project.org/doc/manuals/R-admin.html#Linear-algebra) ) Prior to compiling R-2.11.1 sh conigure --help gave options including the following SHLIB_LD command for linking shared libraries which contain object files from a C or Fortran compiler only SHLIB_LDFLAGS special flags used by SHLIB_LD SHLIB_CXXLDFLAGS special flags used by SHLIB_CXXLD SHLIB_FCD co...

I originally posted on this topic on a different thread: https://stat.ethz.ch/pipermail/r-devel/2016-August/072938.html These sources suggested that a safe practice might be to put double quotes around symbol names in EXPORTS in case the symbol name is the same as a linker keyword: - https://sourceware.org/binutils/docs/ld/Symbols.html#Symbols -

...5; then ## <NOTE> ## This should really use MAIN_LD, and hence come after this is ## determined (and necessary additions to MAIN_LDFLAGS were made). ## But it seems that we currently can always use the C compiler. ## Also, to be defensive there should be a similar test with SHLIB_LD ## and SHLIB_LDFLAGS (and note that on HPUX with native cc we have to ## use ld for SHLIB_LD) ... if ${CC} ${CFLAGS} ${LDFLAGS} ${MAIN_LDFLAGS} -o conftest${ac_exeext} \ conftest.${ac_objext} conftestf.${ac_objext} ${FLIBS} \ ${LIBM} 1>&5 2>&5; ## </NO...

I am running into the following issue that has been previously reported on the R-devel mailing list. The short version is that I'm writing a package for MPI, and I'd like to change CC and SHLIB_LD to "mpicc". Trying to change them in Makevars.in has no effect, because the values are clobbered by /etc/R/Makeconf. Will the following changes to Makeconf.in introduce any problems? --Michael Subject: [Rd] R CMD INSTALL configure.args and CC customization From: Paul Johnson (paul......

I am building from source on RHEL 4 and have run into a problem while running "make check": running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1 make[3]: Leaving directory `/opt/R/R-2.9.1/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/opt/R/R-2.9.1/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving

...GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5) 2) the SHLIB file is the same, but some difference in /usr/local/lib/R/etc/Makeconf: SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = g++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = .so SHLIB_FCLD = g77 SHLIB_FCLDFLAGS = -shared SHLIB_FFLAGS = SHLIB_LD = gcc -std=gnu99 SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) what should I do? thanks, xinan

Dear all, I have a problem to build a package on Windows XP while there is no problem on Linux. The Makefile is something like: ########### LIBNAME=cts PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) OBJS=file1.o ... file20.o -llapack -lblas $(LIBNAME)$(SHLIB_EXT): $(OBJS) $(SHLIB_LD) $(SHLIB_LDFLAGS) -o $@ $(OBJS) $(FLIBS) clean: @rm -f *.o *.$(SHLIB_EXT) realclean: clean ############# To build the package on Windows XP, I have followed the instructions to install tools/software required and it seems the 'make' worked fine, except for the error message: ma...

...-mtune=generic -c bucketApproxSort.cc -o bucketApproxSort.o c:/Rtools/mingw_32/bin/g++: not found make: *** [bucketApproxSort.o] Error 127 Warning: running command 'make -f "Makevars.win" -f "M:/R/R-3.4.3/etc/i386/Makeconf" -f "M:/R/R-3.4.3/share/make/winshli b.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="WGCNA.dll" OBJECTS="bucketApproxSort.o corFun ctions-common.o corFunctions-unified.o networkFunctions.o pivot.o quantileC.o"' had status 2 ERROR: compilation failed for package 'WGCNA' * remo...

...W_ZQerycbVU4K_2Dun1ytqNXQ7g%40mail.gmail.com%3E> > /Fri Sep 9 20:40:42 CEST 2011/ > I am running into the following issue that has been previously > reported on the R-devel mailing list. The short version is that I'm > writing a package for MPI, and I'd like to change CC and SHLIB_LD to > "mpicc". Trying to change them in Makevars.in has no effect, because > the values are clobbered by /etc/R/Makeconf. Will the following > changes to Makeconf.in introduce any problems? > > --Michael -- George Ostrouchov Statistics and Data Sciences Group Computer Scie...

...s to use these subroutines in BLAS, for some reason. Now what I want is to build an R library. The Makefile is the following: LIBNAME=car PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) OBJS=isamax.o saxpy.o sscal.o foo1.o ... foo20.o -llapack -lblas $(LIBNAME)$(SHLIB_EXT): $(OBJS) $(SHLIB_LD) $(SHLIB_LDFLAGS) -o $@ $(OBJS) $(FLIBS) clean: @rm -f *.o *.$(SHLIB_EXT) realclean: clean Some compiling outputs are the following: g77 -mieee-fp -fPIC -O2 -g -pipe -march=i386 -mcpu=i686 -c isamax.f -o isamax.o ... g77 -mieee-fp -fPIC -O2 -g -pipe -march=i386 -mcpu=i686 -c foo1....

...GS = LIBM = -lm LIBR = -L$(R_HOME)/bin -lR LIBS = -L/usr/local/lib -lz -lreadline -ldl -lncurses -lm LIBPATHS = -L/usr/local/lib LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = c++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = so SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -- Jonathan Q. Li, PhD Agilent Technologies Laboratory Palo Alto, California, USA -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://w...

...GS = LIBM = -lm LIBR = -L$(R_HOME)/bin -lR LIBS = -L/usr/local/lib -lz -lreadline -ldl -lncurses -lm LIBPATHS = -L/usr/local/lib LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = c++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = so SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -- Jonathan Q. Li, PhD Agilent Technologies Laboratory Palo Alto, California, USA -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://w...

Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o

(I asked an earlier question on the rpy2 installation to the rpy2 list, the solution there was to edit the setup.py script, but this looks beyond what I can do unless someone tells me exactly what to modify). I have R 2.8.1 on 2 machines running ubuntu 8.04 (packages R-base and R-base-dev, among others, installed using Synaptic) and while the installation of rpy2 went fine on machine1, failed on

...specified, the value # of CPICFLAGS above is used. # FPICFLAGS= # The command to be used to load shared libraries which contain object # files from a C or Fortran compiler only. This is usually the C # compiler or `ld', but the automatic choice can be overridden by means # of this variable. # SHLIB_LD= # Any special flags which are required by the linker when creating # shared libraries containing object files from a C or Fortran # compiler only. This is usually automatically detected by configure, # and anything set here will be in addition unless SHLIB_LD is given. # SHLIB_LDFLAGS= # For `-...

...Sort.cc > -o bucketApproxSort.o > c:/Rtools/mingw_32/bin/g++: not found > make: *** [bucketApproxSort.o] Error 127 > Warning: running command 'make -f "Makevars.win" -f > "M:/R/R-3.4.3/etc/i386/Makeconf" -f "M:/R/R-3.4.3/share/make/winshli > b.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' > SHLIB="WGCNA.dll" OBJECTS="bucketApproxSort.o corFun > ctions-common.o corFunctions-unified.o networkFunctions.o pivot.o > quantileC.o"' had status 2 > ERROR: compilation failed for package ...

Example input and output to reproduce this can be found at https://gist.github.com/jimhester/b7f05f50794c88e44b17. I tested this attempting to compile the [digest]( http://cran.r-project.org/web/packages/digest/index.html) package, `run.sh` and `run.bat` were both run in the package source directory on Ubuntu 14.01 and Windows 7 respectively. In particular while the `CFLAGS` values were properly

...command 'make -f "Makevars" -f "C:/R/R-34~1.0/etc/i386/Makeconf" -f "C:/R/R-34~1.0/share/make/winshlib.mk" -f "C:/Users/john/Documents/.R/Makevars" CXX='$(CXX11) $(CXX11STD)' CXXFLAGS='$(CXX11FLAGS)' CXXPICFLAGS='$(CXX11PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX11LDFLAGS)' SHLIB_LD='$(SHLIB_CXX11LD)' SHLIB="Boom.dll" ' had status 2 ERROR: compilation failed for package 'Boom' * removing 'C:/RownLib/Boom' * restoring previous 'C:/RownLib/Boom' Warning in install.packages : running com...

...>> "C:/R/R-34~1.0/etc/i386/Makeconf" -f >> "C:/R/R-34~1.0/share/make/winshlib.mk" -f >> "C:/Users/john/Documents/.R/Makevars" CXX='$(CXX11) $(CXX11STD)' >> CXXFLAGS='$(CXX11FLAGS)' CXXPICFLAGS='$(CXX11PICFLAGS)' >> SHLIB_LDFLAGS='$(SHLIB_CXX11LDFLAGS)' SHLIB_LD='$(SHLIB_CXX11LD)' >> SHLIB="Boom.dll" ' had status 2 >> ERROR: compilation failed for package 'Boom' >> * removing 'C:/RownLib/Boom' >> * restoring previous 'C:/RownLib/Boom' >&gt...

...ct the correct ## value by configure. ## FPICFLAGS= ## The command to be used to create shared objects which contain object ## files from a C or FORTRAN 77 compiler only. This is usually the C ## compiler or 'ld', but the automatic choice can be overridden by means ## of this variable. ## SHLIB_LD= ## Any special flags which are required by the linker when creating ## shared objects containing object files from a C or FORTRAN 77 ## compiler only. This is usually automatically detected by configure, ## and anything set here will be in addition unless SHLIB_LD is given. ## SHLIB_LDFLAGS= ##...