search for: shlib_cxxld

.../intel/composerxe/mkl/lib/intel64 INC_LIB_PATH=/usr/local/lib export CC="icc -std=c99" export CFLAGS="-g -O3 -wd188 -ip" export F77=ifort export FFLAGS="-g -O3" export CXX=icpc export CXXFLAGS="-g -O3" export FC=ifort export FCFLAGS="-g -O3" export SHLIB_CXXLD=icpc export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MKL_LIB_PATH}:${INC_LIB_PATH}:${CMP_LIB_PATH} export LDFLAGS="-L${MKL_LIB_PATH},-L${INC_LIB_PATH},-L${CMP_LIB_PATH},-Bdirect,--hash-style=both,-Wl,-O1" export SHLIB_LDFLAGS="-lpthread" export SHLIB_CXXLDFLAGS="-lpthread&quo...

...the R install and admin manual but could not find an answer. Help? CC=icc CFLAGS="-fast -unroll" F77=ifort FLAGS="-fast -unroll" CXX=icpc CXXFLAGS="-fast -unroll" FC=ifort FCFLAGS="-fast -unroll" LDFLAGS="-L$ICC_LIBS -L$IFC_LIBS -L/usr/local/lib64" SHLIB_CXXLD=icpc ../configure --prefix=/N/u/mkimpel/Quarry/R_HOME/R-patched/R-build\ CC=icc CFLAGS="-fast -unroll -wd188" F77=ifort FFLAGS="-fast -unroll" \ CXX=icpc CXXFLAGS="-fast -unroll" FC=ifort FCFLAGS="-fast -unroll" \ ICC_LIBS=/N/soft/linux-rhel4-x86_64/intel/cce...

...ketApproxSort.cc -o bucketApproxSort.o c:/Rtools/mingw_32/bin/g++: not found make: *** [bucketApproxSort.o] Error 127 Warning: running command 'make -f "Makevars.win" -f "M:/R/R-3.4.3/etc/i386/Makeconf" -f "M:/R/R-3.4.3/share/make/winshli b.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="WGCNA.dll" OBJECTS="bucketApproxSort.o corFun ctions-common.o corFunctions-unified.o networkFunctions.o pivot.o quantileC.o"' had status 2 ERROR: compilation failed for package 'WGCNA' * removing 'M:/R/R-3.4.3/l...

...Prior to compiling R-2.11.1 sh conigure --help gave options including the following SHLIB_LD command for linking shared libraries which contain object files from a C or Fortran compiler only SHLIB_LDFLAGS special flags used by SHLIB_LD SHLIB_CXXLDFLAGS special flags used by SHLIB_CXXLD SHLIB_FCD command for linking shared libraries which contain object files from the Fortran 95 compiler SHLIB_FCLDFLAGS special flags used by SHLIB_FCLD I did not know wha...

(I asked an earlier question on the rpy2 installation to the rpy2 list, the solution there was to edit the setup.py script, but this looks beyond what I can do unless someone tells me exactly what to modify). I have R 2.8.1 on 2 machines running ubuntu 8.04 (packages R-base and R-base-dev, among others, installed using Synaptic) and while the installation of rpy2 went fine on machine1, failed on

...-2022.1.0/mkl MKL="-L${MKLROOT}/lib/intel64 -lmkl_gf_lp64 -lmkl_core -lmkl_gnu_thread -dl -fopenmp" export CC="icc -std=c99" export CFLAGS="-g -O3 -wd188 -ip -mp" export FC=ifort export FLAGS="-g -O3 -mp" export CXX=icpc export CXXFLAGS="-g -O3 -mp" SHLIB_CXXLD=icpc export MKL_INTERFACE_LAYER=GNU,LP64 export MKL_THREADING_LAYER=GNU ./configure --prefix=/opt/intel-2021.6.0/R/4.3.1 --with-blas="$MKL" --with-lapack --enable-memory-profiling --enable-BLAS-shlib --enable-R-shlib --enable-R-static-lib --with-pcre2 Thanks a lot, Giuseppe. ?????????...

...is made to automatically detect the correct value by # configure. # CXXPICFLAGS= # The command to be used to load shared libraries which contain object # files from a C++ compiler. This is usually the C++ compiler/linker, # but the automatic choice can be overridden by means of this variable. # SHLIB_CXXLD= # Any special flags which are required when creating shared libraries # containing object files from a C++ compiler. This is usually # automatically detected by configure, and anything set here will be in # addition unless SHLIB_CXXLD is given. # SHLIB_CXXLDFLAGS= # Tcl/Tk settings. # Use TCLTK...

...tApproxSort.o > c:/Rtools/mingw_32/bin/g++: not found > make: *** [bucketApproxSort.o] Error 127 > Warning: running command 'make -f "Makevars.win" -f > "M:/R/R-3.4.3/etc/i386/Makeconf" -f "M:/R/R-3.4.3/share/make/winshli > b.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' > SHLIB="WGCNA.dll" OBJECTS="bucketApproxSort.o corFun > ctions-common.o corFunctions-unified.o networkFunctions.o pivot.o > quantileC.o"' had status 2 > ERROR: compilation failed for package 'WGCNA' > * rem...

...hz.ch/pipermail/bioc-devel/2007-June/001168.html But, My condition is some how different: 1) my g++ version is: g++ (GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5) 2) the SHLIB file is the same, but some difference in /usr/local/lib/R/etc/Makeconf: SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = g++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = .so SHLIB_FCLD = g77 SHLIB_FCLDFLAGS = -shared SHLIB_FFLAGS = SHLIB_LD = gcc -std=gnu99 SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) what should I do? thanks, xinan

...O3 -wd188 -ip" CPPFLAGS="-no-gcc" F77=ifort FLAGS="-g -O3" CXX=icpc CXXFLAGS="-g -O3" FC=ifort FCFLAGS="-g -O3 -mp" ICC_LIBS=/opt/intel/cce/10.1.015/lib/ IFC_LIBS=/opt/intel/fce/10.1.015/lib/ LDFLAGS="-L$ICC_LIBS -L$IFC_LIBS -L/usr/local/lib64" SHLIB_CXXLD=icpc SHLIB_LDFLAGS="-shared" #SHLIB_CXXLDFLAGS=-G -lCstd 4: ./configure --enable-R-shlib - first time it broke here since I had no flags set for SHLIB_LDFLAGS, so just put it at -shared for lack of a brighter idea ... seems to work (with only a warming about SHLIB_CXXLDFLAGS, hence the c...

...to automatically detect the correct value by ## configure. ## CXXPICFLAGS= ## The command to be used to load shared libraries which contain object ## files from a C++ compiler. This is usually the C++ compiler/linker, ## but the automatic choice can be overridden by means of this ## variable. ## SHLIB_CXXLD= ## Any special flags which are required when creating shared libraries ## containing object files from a C++ compiler. This is usually ## automatically detected by configure, and anything set here will be in ## addition unless SHLIB_CXXLD is given. ## SHLIB_CXXLDFLAGS= ## FORTRAN 95 compiler:...

Hello, Its a couple of days I am fighting with this problem, and cannot find a solution. I need to compile a DLL that is not directly used by R, but must be installed elsewhere (it is indeed part of a Tcl/Tk package). So, I want to install it in /tklibs/tkpackage/alib.dll (under Windows) in my compiled package. I do manage to compile it in /src, but cannot copy it at the right place. I

...>> -lmkl_gnu_thread -dl -fopenmp" >> export CC="icc -std=c99" >> export CFLAGS="-g -O3 -wd188 -ip -mp" >> export FC=ifort >> export FLAGS="-g -O3 -mp" >> export CXX=icpc >> export CXXFLAGS="-g -O3 -mp" >> SHLIB_CXXLD=icpc >> export MKL_INTERFACE_LAYER=GNU,LP64 >> export MKL_THREADING_LAYER=GNU >> ./configure --prefix=/opt/intel-2021.6.0/R/4.3.1 --with-blas="$MKL" >> --with-lapack? --enable-memory-profiling --enable-BLAS-shlib >> --enable-R-shlib --enable-R-static-lib --...

...er system and this version of R was installed by the admins). Using "R CMD config", I see the following relevant settings: DYLIB_LD = icc -std=gnu99 DYLIB_LDFLAGS = -shared -openmp LDFLAGS = -L/opt/compilers/intel/cce/9.1.039/lib -L/opt/compilers/intel/fce/9.1.033/lib -L/usr/local/lib64 SHLIB_CXXLD = icpc SHLIB_CXXLDFLAGS = SHLIB_LD = icc -std=gnu99 SHLIB_LDFLAGS = -shared It looks like the SHLIB_CXXLDFLAGS is missing the "-shared -lR -L<loc-of-libR>". It's a mystery to me how R was built and configured such that it has incomplete/incorrect flags. By trial and error I...

...-lm -L/usr/lib/gcc-lib/i386-linux/2.95.4 -lm FPICFLAGS = -fPIC F2C = F2CFLAGS = LIBM = -lm LIBR = -L$(R_HOME)/bin -lR LIBS = -L/usr/local/lib -lz -lreadline -ldl -lncurses -lm LIBPATHS = -L/usr/local/lib LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = c++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = so SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -- Jonathan Q. Li, PhD Agilent Technologies Laboratory Palo Alto, California, USA -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-...

...-lm -L/usr/lib/gcc-lib/i386-linux/2.95.4 -lm FPICFLAGS = -fPIC F2C = F2CFLAGS = LIBM = -lm LIBR = -L$(R_HOME)/bin -lR LIBS = -L/usr/local/lib -lz -lreadline -ldl -lncurses -lm LIBPATHS = -L/usr/local/lib LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = c++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = so SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -- Jonathan Q. Li, PhD Agilent Technologies Laboratory Palo Alto, California, USA -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-...

Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o

I am building from source on RHEL 4 and have run into a problem while running "make check": running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1 make[3]: Leaving directory `/opt/R/R-2.9.1/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/opt/R/R-2.9.1/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving

...made to automatically detect the correct value by # configure. CXXPICFLAGS=-Kpic # The command to be used to load shared libraries which contain object # files from a C++ compiler. This is usually the C++ compiler/linker, # but the automatic choice can be overridden by means of this variable. # SHLIB_CXXLD= # Any special flags which are required when creating shared libraries # containing object files from a C++ compiler. This is usually # automatically detected by configure, and anything set here will be in # addition unless SHLIB_CXXLD is given. # SHLIB_CXXLDFLAGS= # Tcl/Tk settings. # Use TCLTK...

Hi, I'm encountering trouble compiling caTools_1.17.1.tar.gz and e1071_1.6-4.tar.gz on a Linux system using the Intel compiler suite. 14 other packages I generally use installed without any trouble. I notice both of these trouble packages have a C++ component, so I wonder if that might be the issue. Below, there's information on my platform, compiler, and some diagnostic output showing