search for: shlib_cxxflags

...rors for libRblas.so. To fix it: add '-shared' to the SHLIB_LDFLAGS, SHLIB_CXXLDFLAGS and SHLIB_FCLDFLAGS before starting configure. So the complete set of variables' values sufficient to build for the amd64 target (as used on OpenIndiana 151a2 with gcc 4.6.2): SHLIB_LDFLAGS=-shared SHLIB_CXXFLAGS=-shared SHLIB_FCLDFLAGS=-shared CFLAGS=-m64 CXXFLAGS=-m64 FFLAGS=-m64 FCFLAGS=-m64 LDFLAGS=-m64 -L/usr/local/lib/amd64 CPPFLAGS=-I/usr/local/include Additionally you'll need the gnu libiconv, which resides probably in /usr/gnu, so the CPPFLAGS will need an -I/usr/gnu/include and the LDFLAGS...

I am building from source on RHEL 4 and have run into a problem while running "make check": running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1 make[3]: Leaving directory `/opt/R/R-2.9.1/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/opt/R/R-2.9.1/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving

...: https://stat.ethz.ch/pipermail/bioc-devel/2007-June/001168.html But, My condition is some how different: 1) my g++ version is: g++ (GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5) 2) the SHLIB file is the same, but some difference in /usr/local/lib/R/etc/Makeconf: SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = g++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = .so SHLIB_FCLD = g77 SHLIB_FCLDFLAGS = -shared SHLIB_FFLAGS = SHLIB_LD = gcc -std=gnu99 SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) what should I do? thanks, xinan

Hello, I'm writing an R package that is mainly written in C++. By default, R CMD INSTALL creates C/C++ flags as follows: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g However, my package is fairly large. With debug info compiled into the library, the generated .so file is over 200MB. Without debug info, it's about 30MB. I hope

...O2 FLIBS = -lg2c -lm -L/usr/lib/gcc-lib/i386-linux/2.95.4 -lm FPICFLAGS = -fPIC F2C = F2CFLAGS = LIBM = -lm LIBR = -L$(R_HOME)/bin -lR LIBS = -L/usr/local/lib -lz -lreadline -ldl -lncurses -lm LIBPATHS = -L/usr/local/lib LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = c++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = so SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -- Jonathan Q. Li, PhD Agilent Technologies Laboratory Palo Alto, California, USA -.-.-.-.-.-.-.-.-.-.-.-.-.-....

...O2 FLIBS = -lg2c -lm -L/usr/lib/gcc-lib/i386-linux/2.95.4 -lm FPICFLAGS = -fPIC F2C = F2CFLAGS = LIBM = -lm LIBR = -L$(R_HOME)/bin -lR LIBS = -L/usr/local/lib -lz -lreadline -ldl -lncurses -lm LIBPATHS = -L/usr/local/lib LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = c++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = so SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -- Jonathan Q. Li, PhD Agilent Technologies Laboratory Palo Alto, California, USA -.-.-.-.-.-.-.-.-.-.-.-.-.-....

Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o

...#39; R_XTRA_CPPFLAGS2='-I$(R_INCLUDE_DIR)' R_XTRA_CPPFLAGS='' R_XTRA_CXXFLAGS='' R_XTRA_FFLAGS='' R_XTRA_LIBS='' R_ZIPCMD='/usr/bin/zip' SAFE_FFLAGS='' SED='//bin/sed' SET_MAKE='' SHELL='/bin/sh' SHLIB_CFLAGS='' SHLIB_CXXFLAGS='' SHLIB_CXXLD='' SHLIB_CXXLDFLAGS='' SHLIB_EXT='' SHLIB_FCD='' SHLIB_FCLD='' SHLIB_FCLDFLAGS='' SHLIB_FFLAGS='' SHLIB_LD='' SHLIB_LDFLAGS='' SHLIB_LIBADD='' STRIP='' SUPPORT_MBCS='' SUPPORT_UTF8...

...es,hyper' R_UNZIPCMD='/usr/bin/unzip' R_XTRA_CFLAGS='' R_XTRA_CPPFLAGS='' R_XTRA_CXXFLAGS='' R_XTRA_FFLAGS='' R_XTRA_LIBS='' R_ZIPCMD='/usr/bin/zip' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' SHLIB_CFLAGS='' SHLIB_CXXFLAGS='' SHLIB_CXXLD='' SHLIB_CXXLDFLAGS='' SHLIB_EXT='' SHLIB_FFLAGS='' SHLIB_LD='' SHLIB_LDFLAGS='' SHLIB_LIBADD='' STRIP='strip' TAR='tar' TCLTK_CPPFLAGS='' TCLTK_LIBS='' TCL_CONFIG='' TEX='fals...

...e' R_RD4PDF='ae,hyper' R_UNZIPCMD='/usr/bin/unzip' R_XTRA_CFLAGS='' R_XTRA_CPPFLAGS='' R_XTRA_CXXFLAGS='' R_XTRA_FFLAGS='' R_XTRA_LIBS='' R_ZIPCMD='/usr/bin/zip' SET_MAKE='' SHELL='/bin/bash' SHLIB_CFLAGS='' SHLIB_CXXFLAGS='' SHLIB_CXXLD='' SHLIB_CXXLDFLAGS='' SHLIB_EXT='' SHLIB_FFLAGS='' SHLIB_LD='' SHLIB_LDFLAGS='' SHLIB_LIBADD='' STRIP='strip' TAR='tar' TCLTK_CPPFLAGS='' TCLTK_LIBS='' TCL_CONFIG='' TEX='/usr...

Hello Everyone,   Learning about R and its wonderful array of functions. If it's not obvious, I usually try to find out what a function stands for. I think this helps me remember better.   One function that has me stumped is "sink." Can anyone tell me if this stands for something?   Thanks,   Paul         __________________________________________________ [[alternative HTML