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...inal matrix was ranked from top so I don't want to lose the order too. For the similar problem, I have used "match" function and do some manipulate to identify the index of the first appearance of each value but is there any better and neat way to achieve the same function? Thanks, Seungyeul Yoo Postdoc Fellow, Institute of Genomics and Multiscale Biology Department of Genetics and Genomic Sciences Mount Sinai School of Medicine

...rame.default(x) : cannot coerce class 'structure("TilingFeatureSet", package = "oligoClasses")' into a data.frame Calls: merge ... merge.default -> merge -> as.data.frame -> as.data.frame.default Can you please help with some advices? Thanks, Best regards, Seungyeul Yoo Postdoc Fellow, Institute of Genomics and Multiscale Biology Department of Genetics and Genomic Sciences Mount Sinai School of Medicine