search for: sessioninfo

The printing of the locale information from sessionInfo is not very tidy. Using toLatex(sessionInfo) pretty much guarantees "badness" from breaking the margin boundary (though my version of TeX no longer reports such errors). A random example is here: http://cran.r-project.org/web/packages/Matrix/vignettes/Design-issues.pdf I find the locale...

In a private response to Tony Plate's suggestion to replace version() output with sessionInfo() in R-help requests, > roger koenker wrote: >> Thanks for this, it would seem useful to have version numbers for >> the packages too? and Tony replied, > > Sounds sensible to me! If I were you I'd send a message to R-devel > suggesting this. AFAIK, some changes to...

Some changes have been made to the posting guide, based on suggestions from various R-help contributors over the past year. The most significant change is the recommendation to use 'sessionInfo()' rather than 'version' when asking questions about unexpected behavior or bugs. This change was made because 'sessionInfo()' reports the version and a list of packages currently attached. As more and more packages become available, it becomes more likely that unexpecte...

Hi, sessionInfo() has been proven really useful, but you still often have to ask for additional information in order to help troubleshooting. For instance, for troubleshooting the aroma.affymetrix, it is very helpful to know what the current working directory is, for other packages certain system environment varia...

Hi All, I was wondering if there would be any interest in adding an option to the "save" function in R that I think would be useful. I was thinking that it might be useful to have an option that would generate a ".sessionInfo" variable that contains the output of "sessionInfo()", and adds it to the list of objects to be saved. This way, whenever an RData object is loaded, all the information about the R version, and attached packages present would be available for query. I know I have been bitten by the...

Dear all I am writing an Sweave document and have encountered formatting issues with the "locale" part of toLatex(sessionInfo()). The fact that there is no spaces between the various "locale" variables means that LaTeX cannot easily find an appropriate place to break the lines, and some will get printed off screen. Below is the text output, and this .pdf document [1] shows the (faulty) tex result. Could anyone s...

[Using R 2.7.2 on Windows XP] After re-building our heplots package, I've begun to get the following error from sessionInfo(), even though it passes R CMD check and builds without errors: > sessionInfo() Error in x$Priority : $ operator is invalid for atomic vectors In addition: Warning message: In FUN(c("MASS", "heplots", "car", "rgl", "stats", "graphics"...

Each of the following calls crash ("core dumps") R (R --vanilla) on various versions and OSes: regexpr("a{2-}", "") sub("a{2-}", "") gsub("a{2-}", "") EXAMPLES: > sessionInfo() R version 2.11.1 Patched (2010-09-16 r52949) Platform: i386-pc-mingw32 (32-bit) ... > regexpr("a{2-}", "") Assertion failed: iter->max == -1 || iter->max == 1, file tre-compile.c, line 1825 This application has requested the Runtime to terminate it in an unusual way....

Each of the following calls crash ("core dumps") R (R --vanilla) on various versions and OSes: regexpr("a{2-}", "") sub("a{2-}", "") gsub("a{2-}", "") EXAMPLES: > sessionInfo() R version 2.11.1 Patched (2010-09-16 r52949) Platform: i386-pc-mingw32 (32-bit) ... > regexpr("a{2-}", "") Assertion failed: iter->max == -1 || iter->max == 1, file tre-compile.c, line 1825 This application has requested the Runtime to terminate it in an unusual way....

...ript, my workspace, etc. to the above filepath, but today they are not there. A Windows search of my C:drive using the names of the files came up empty. They didn’t show up when I listed the objects from the default R directory, either --- ls() command didn’t list yesterday’s files. Further, the sessionInfo output is like nothing I’ve seen before. Typically, it starts out with “R version 2.8.1 (2008-12-22) i386-pc-mingw32 … Thank you, Paul > ?saveLog No documentation for 'saveLog' in specified packages and libraries: you could try '??saveLog' > ??saveLog No help files found...

...60) it will take 1 minute. Note that the following print("done") is not called, so the timeout error does propagate immediately after Sys.sleep() but not before / during. This looks like a bug to me. Can anyone on macOS confirm whether this is also a problem there or not? /Henrik > sessionInfo() R version 3.3.1 (2016-06-21) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows XP x64 (build 2600) Service Pack 3 > sessionInfo() R version 3.3.1 (2016-06-21) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 16.04.1 LTS > sessionInfo() R version 2.11.0 (2010-04-...

...was slightly surprised to notice that R incorrectly detected some of the locale settings. I am not sure whether this is important, but I preferred to drop a message. In the R output below, some entries that should have been "en_GB.UTF-8" are presented as "C". Regards Liviu > sessionInfo() R version 2.9.1 (2009-06-26) x86_64-pc-linux-gnu locale: LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C attached base pac...

...gt; pdf(file="deltaTest.pdf") > plot(c(0,1),c(0,1),main=expression(paste(symbol("D"),"D",sep=""))) > dev.off() the uppercase delta looks like O with overstrike slash, i.e. ?. Other greek alphabets, such as Gamma, seem to work fine for pdf as well. My sessioninfo for this is > sessionInfo() R version 2.11.1 (2010-05-31) x86_64-pc-linux-gnu locale: [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_GB.UTF-8 [7] LC_PAPER=en_GB.UTF-8...

...#39; # Also tried with: R CMD check --outdir foo pkg_0.1.tar.gz Warning: unknown option '--outdir' R CMD check -outdir=foo pkg_0.1.tar.gz Warning: unknown option '-outdir=foo' R CMD check -outdir foo pkg_0.1.tar.gz Warning: unknown option '-outdir' I get this with: > sessionInfo() R version 3.0.0 (2013-04-03) Platform: x86_64-w64-mingw32/x64 (64-bit) > sessionInfo() R Under development (unstable) (2013-04-02 r62479) Platform: x86_64-w64-mingw32/x64 (64-bit) > sessionInfo() R version 2.15.3 (2013-03-01) Platform: x86_64-unknown-linux-gnu (64-bit) Should I report t...

...) windows() plot(x) z <- locator(2,type="l",col="red") windows() plot(window(x, start = min(z$x), end = max(z$x))) windows() ewma(window(x, start = min(z$x), end = max(z$x))) dev.set(3) plot(window(x, start = min(z$x), end = max(z$x))) } > sessionInfo() R version 2.11.1 (2010-05-31) i386-pc-mingw32 locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils...

Recently I was trying to cite a package where the authors have ? and ? in their names. I found that on Windows the citation() function did not return the authors' names at all, but on Linux there was no problem (sessionInfos at the bottom): On Windows, no author names are returned: #--------------- > citation("readr") To cite package ?readr? in publications use: (2017). readr: Read Rectangular Text Data. R package version 1.1.1. https://CRAN.R-project.org/package=readr A BibTeX entry for LaTe...

...or locator() now, trying to close the window by clicking on the cross of the upper right corner causes Rgui (and Rterm) to crash. I see the same behaviour on 2 different Windows PC (one with Win 8.1 and one with Win 10). I did not see the problem in linux (see below) WINDOWS ************** > sessionInfo() R version 3.3.0 beta (2016-04-04 r70420) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 10586) locale: [1] LC_COLLATE=Italian_Italy.1252 LC_CTYPE=Italian_Italy.1252 [3] LC_MONETARY=Italian_Italy.1252 LC_NUMERIC=C [5] LC_TIME=Italian_Italy.1252 attached base pack...

Hi, All: Attached please find a symmetric, indefinite matrix for which 'eigen(...)$vectors' included NAs: > load("eigenBug.Rdata") > sum(is.na(eigen(eigenBug)$vectors)) [1] 5670 > sessioninfo() Error: could not find function "sessioninfo" > sessionInfo() R version 2.4.1 (2006-12-18) i386-pc-mingw32 locale: LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252 atta...

...file()) : cannot open URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt' In addition: Warning message: In download.file(url, tempfile()) : InternetOpenUrl failed: '' If I set method="curl" it works fine. This was on R-3.2.2-beta (sessionInfo() below) but I got the same results in R-3.2.1 and R-devel. This does not happen on Windows Server 2008 but it happens on Windows Server 2012. Dan > sessionInfo() R version 3.2.2 beta (2015-08-05 r68859) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows Server 2012 x64 (build...

...ed object file: No such file or directory Error : .onLoad failed in 'loadNamespace' for 'Rgraphviz' Error: package/namespace load failed for 'Rgraphviz' The path to Rgraphviz.so is correct ! Can someone help with this? this is the session info .... regards Marco > sessioninfo() Error: could not find function "sessioninfo" > sessionInfo() R version 2.5.0 (2007-04-23) x86_64-unknown-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_AD...