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seq_index
2001 Oct 06
0
calculating DNA mismatch distributions for large populations
...wo sequences (mismatches). My sequences are stored in a vector of
strings. There is an additional vector of the same length that
provides the indices to the DNA sequences. Finally, I have output
from table() that gives the distribution of indices in the population.
It looks something like this:
seqindex 1,2,3,4,5
sequences "ATG","ATC","AAT","CTT","GTC"
table() output of
seqindex frequencies:
1 2 3 4 5
6 10 5 1 7
The sequences are usually around 100 characters long (rather than 3)
and there can be several hundred differe...