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...quot;, ylab = "Growth", cex.lab = 1.5, x.leg = 1, col = "black", angle = 45, cex.names = 1.25, density = c(0,20), legend = TRUE) Error in dn.call[[1]] : subscript out of bounds It is the example on bargraph.CI function page http://127.0.0.1:16950/library/sciplot/html/bargraph.CI.html Thanks a lot, Cheers Barbara [[alternative HTML version deleted]]

Hi there, I wonder if anyone can help me. I'm trying to use bargraph.CI in the Sciplot package when there is a missing combination of the factor levels. Unfortunately the standard errors on the plot do not appear to be correct. Consider an analysis consisting of two factors A and B. When all factor level combinations are present all appears fine: library(sciplot) #all data respon...

Dear R community, I am a beginner using the sciplot package to graph barplots. I would like to be able to graph two x factors (Sampling.year and Period). Sampling.year: 2006, 2007, 2008, 2009 Period: First, Second, Total The parameter "group" is the different species I looked at. They can be seen in the legend. The parameter "...

...However, as the graphs are exctly overlaid, it is not possible to distinguish the confidence intervals. How do I introduce jitter? Data2007, Data2008 and Data2009 are the dataframes with the data from that particular year including all the stations. I have also tried lineplot.CI from the package sciplot and also there I am not able to introduce jitter. I have looked at the helpfiles. PACKAGE GGPLOT: library(gplots) par(family="serif",font=1) plotmeans(TN ~ STATION, data =Data2007, bars=TRUE, p=0.95, pch=1, cex=0.8, n.label=FALSE,...

I was trying to install software named ncview on a centos 5.3 box. ./configure command gave this error: Error, the X libraries and development headers must be installed for ncview to work! I was surprised that there were many google hits related to ubuntu, none for centos. So even though I eventually figured out what to do, I decided to share this with the list anyhow, so maybe next time I

The package "sciplot" is now available for download from CRAN. This package includes a collection of functions that create graphs with error bars for data collected from one-way or higher factorial designs, as well as a function to plot bifurcation diagrams resulting from analysis with XPPAUTO. The functions in th...

..., "23", "24", "25", "26", "27", "28", "29", "30"), class = " data.frame") try$visit <- ordered(try$visit,levels=c("Screening","0","5","50","100")) library(sciplot) attach(try) lineplot.CI(visit,variable,group,type = "b", bty = "n", pch = 16, fixed=TRUE, ylab = "Mean of Variable", xtick = TRUE,...

hi List and Manuel, I have encounter the following problem with the function "lineplot.CI".? I'm running R 2.10.1, sciplot 1.0-7 on Win XP.? It seems like it's a scoping issue, but I couldn't figure it out. Thanks! ...Tao > lineplot.CI(x.factor = dose, response = len, data = ToothGrowth)??? ## fine > lineplot.CI(x.factor = dose, response = len, data = ToothGrowth, fun=median)? ## fine > lineplot.C...

...x(), but I everything is overlaid. Also, I am pretty sure that the means are wrong as I have assumed that the below calculates the mean of each factor level separately and not the mean per level factor 1 AND factor 2. Is there a way of doing this in ggplot2? I have also tried plotmeans() in the sciplot package, but was unsuccessful. Sincerely Anna Zakrisson library(plotrix) ?brkdn.plot par(family="serif",font=1) brkdn.plot("y1", "factor1","factor2", data=mydata, mct="mean",md="sd", main="", ce...

Hi, I would like to have lineplot.CI and barplot.CI to actually plot confidence intervals , instead of standard error. I understand I have to use the ci.fun option, but I'm not quite sure how. Like this : > qt(0.975,df=n-1)*s/sqrt(n) but how can I apply it to visualize the length of the student's T confidence intervals rather than the stdandard error of the plotted means

Hello! I have a problem which I have tried to solve for several days now.. I have plottet a lineplot.CI in the library "sciplot", and I am trying to plot it with a logaritmic y-axis (with exponential base). The problem is that; when I type "log "y"", the axis transforms into the logaritmic of base 10. I wonder if someeone could tell me how to specify that I would like to use the exponential logari...

Hi there, I am a beginner. I would like to change the error bars in the bargraph.CI function from the default (se) to (sd). The help file says ci.fun= function(x) c(fun(x)-se(x), fun(x)+se(x)) Is there a simple way of telling the function what (x) precisely is - I already define in in the of the bargraph.CI function and assume that is should be able to use that information. cheers, Herwig --

Hello, When using bargraph.CI in package sciplot can the bars for each group be different colors? How do I select the color for each group? When I use this instead of the default (SD vs SE): bargraph.CI(x.factor = dose, response = len, data = ToothGrowth, ci.fun= function(x) c(mean(x)-sd(x), mean(x) + sd(x)) ) Am I getting 95...

...8 0.377 306 2 8 0.488 306 3 8 0.409 306 1 12 1.106 306 2 12 1.348 306 3 12 1.246 306 1 16 2.706 306 2 16 3.073 306 3 16 3.038 I need to plot a graph OD over the time for each one mutant with error bars. I try the package sciplot, but this package is set up to handle factorial treatments, so the spacing in x-axis is fixed to be equal. Than, with it I got something like this: | | | | | +----------------------------- 0 8 12 16 But, I would like spacing between 0 and 8 2-fold the spacign between 8 an...

Hi List, I have a problem plotting data using the lineplot.CI command in the sciplot package. I want to plot the data of 2 experimental cases using different lines (traces). Time is on the X-axis. The tricky thing is that the data collection in the second case started later than for the first case. This is to say: the first n data points for the second case are missing. So far so...

Is it possible to add standard error bars to the means on interaction plots? Thanks Murray -- Murray Pung Statistician, Datapharm Australia Pty Ltd 0404 273 283 [[alternative HTML version deleted]]

Hello, I'm trying to sort my bargraph.CI plot (function like barplot in the SCIPLOT package) by the mean of the response variable. Does somebody have a trick for it. Thank you. Romain Mayor, PHD student.

I'm trying to create a bargraph of means with standard error bars using the function bargraph.CI (in the sciplot package). Like this: bargraph.CI(x.factor, response,data,xlab, ylab, par(family="serif"),font=11) However, an error message comes up when I try to use the par funtion. Does the character font/style need to be changed in a different way for this kind of plot? Or am I misusing the par f...

Hi all, I'm trying to plot error bars in a lattice plot generated with xyplot. Deepayan Sarkar has provided a very useful solution for simple circumstances (https://stat.ethz.ch/pipermail/r-help/2005-October/081571.html), yet I am having trouble getting it to work when the "groups" setting is enabled in xyplot (i.e. multiple lines). To illustrate this, consider the singer data

Hi all, I am using the function "plotCI" with the following command: plotCI(m.residuos.p.2 [1:41],li=m.residuos.p.3 [1:41],ui=m.residuos.p.4 [1:41],lty=1,ylab="") This generates exactly what I want except for the fact that I wanna drawn a line linking the points (m.residuos). How could I do that? Thanks a lot in advance, Caio [[alternative HTML version deleted]]