search for: schaid

I've just uploaded an R version of Daniel Schaid's 'haplo.score' library (from http://www.mayo.edu/statgen/) to CRAN. >From the DESCRIPTION file: [haplo.score is a] suite of routines that can be used to compute score statistics to test associations between haplotypes and a wide variety of traits, including binary, ordinal, qu...

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I see something new and unexpected here. > update.packages() trying URL `http://cran.r-project.org/src/contrib/PACKAGES' Content type `text/plain; charset=iso-8859-1' length 163467 bytes opened URL .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ......... downloaded

...e package contains a method for analysis of genetic linkage with covariates by regression methods that use identity by descent (IBD) sharing probabilities for relative pairs. The methods account for correlations of IBD statistics for relative pairs within the same pedigree. The reference is: Schaid DJ, Sinnwell JP, Thibodeau SN. Testing Genetic Linkage with Relative Pairs and Covariates by Quasi-Likelihood Score Statistics. Submitted. Cheers, Jason Sinnwell ============================ Mayo Clinic, Rochester Division of Biostatistics ph: 507.284.3270 fax...

...e package contains a method for analysis of genetic linkage with covariates by regression methods that use identity by descent (IBD) sharing probabilities for relative pairs. The methods account for correlations of IBD statistics for relative pairs within the same pedigree. The reference is: Schaid DJ, Sinnwell JP, Thibodeau SN. Testing Genetic Linkage with Relative Pairs and Covariates by Quasi-Likelihood Score Statistics. Submitted. Cheers, Jason Sinnwell ============================ Mayo Clinic, Rochester Division of Biostatistics ph: 507.284.3270 fax...

...ilable now on CRAN, with a brief manual available as a vignette: http://cran.r-project.org/web/packages/pedgene/index.html The pedgene package performs gene-level kernel and burden association tests with disease status and continuous response for pedigree data, as described in our recent paper: Schaid, D. J., McDonnell, S. K., Sinnwell, J. P. and Thibodeau, S. N. (2013), Multiple Genetic Variant Association Testing by Collapsing and Kernel Methods With Pedigree or Population Structured Data. Genet. Epidemiol., 37: 409-418. doi: 10.1002/gepi.21727 LINK: http://onlinelibrary.wiley.com/doi/...

...ilable now on CRAN, with a brief manual available as a vignette: http://cran.r-project.org/web/packages/pedgene/index.html The pedgene package performs gene-level kernel and burden association tests with disease status and continuous response for pedigree data, as described in our recent paper: Schaid, D. J., McDonnell, S. K., Sinnwell, J. P. and Thibodeau, S. N. (2013), Multiple Genetic Variant Association Testing by Collapsing and Kernel Methods With Pedigree or Population Structured Data. Genet. Epidemiol., 37: 409-418. doi: 10.1002/gepi.21727 LINK: http://onlinelibrary.wiley.com/doi/...

Sehr geehrte Damen und Herren, hiermit m?chte ich bei Ihnen nachfragen, ob die f?r Splus geschriebene "haplo.score"- Funktion auch unter R verwendet werden kann. siehe http://www.mayo.edu/statgen/software/ Wenn ja, wie sind die Aufrufe Splus CHAPTER -m und Splus make in R zu realisieren? Herzlichen Dank f?r Ihre M?he mit freundlichen Gr??en -- Dr. rer. nat. Andreas Fr?hlich