Displaying 3 results from an estimated 3 matches for "samtools".
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2012 Mar 22
0
Thai vignette, cross-compile for Mac OS X, universal/multiarch (Fwd: Mac OS X builds of CelQuantileNorm, vcftools/samtools/tabix, and snpStats)
...nstead of multi-arch?
(the sentence below as strictly speaking wrong - the R package was
cross-compiled to multi-arch rather than universal).
FYI a few other not-so-relevant things but may be useful to some.
-------- Original Message --------
Subject: Mac OS X builds of CelQuantileNorm, vcftools/samtools/tabix, and snpStats
Date: Wed, 14 Mar 2012 02:59:42 +0000 (GMT)
From: Hin-Tak Leung <htl10 at users.sourceforge.net>
Reply-To: htl10 at users.sourceforge.net
To: bonsai list <outmodedbonsai-announce at lists.sourceforge.net>
CelQantileNorm, vcftools/samtools/tabix are bult for Mac OS X...
2012 Oct 03
1
Retraction: Protocol stacking: gluster over NFS
...56165.20
255562.3 68524.45
237479.3 68813.99
209901.8 73147.73
217020.4 70855.45
The bad news is that I've been able to replicate the failures that JF has
seen. The workflow starts normally but then eats up free RAM as KT's workflow
saturates the nodes with about 26 instances of samtools which does a LOT of
IO (10s of GB in the ~30m of the run). This was the case even when I
increased the number of nfsd's to 16 and even 32.
When using native gluster, the workflow goes to completion in about 23 hrs -
about the same as when KT executed it on his machine (using NFS I think..?...
2010 Apr 27
2
ShortRead with BWA
Dear folks,
Please welcome a newbie both to R and the mailing list :). I am
currently working on a sequencing project, and heard about R as well as
some of its packages for next gen sequencing, and decided to give it a
try. Starting with ShortRead, I found a document
(http://www.bioconductor.org/packages/2.5/bioc/vignettes/ShortRead/inst/doc/ShortRead_and_HilbertVis.pdf)
which does mention