Displaying 14 results from an estimated 14 matches for "sampleid".
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sampled
2010 Dec 09
4
lapply getting names of the list
Hello All,
I have a toy dataframe like this. It has 8 columns separated by tab.
Name SampleID Al1 Al2 X Y R Th
rs191191 A1 A B 0.999 0.09 0.78 0.090
abc928291 A1 B J 0.3838 0.3839 0.028 0.888
abcnab A1 H K 0.3939 0.939 0.3939 0.77
rx82922 B1 J K 0.3838 0.393...
2010 Dec 22
4
vectorised recovery of strsplit value ??
Dear Guru's
My first steps with R have ground to a halt! I have a vector of sample
identifiers
> sampleIDs
[1] "D1_1" "D1_2" "D1_3" "D1_4" "D1_5" "D1_6" "D1_7" "D1_8"
[9] "D1_9" "D1_10" "D1_11" "D1_12" "F1_13" "F1_14" "F1_15" &qu...
2010 May 16
2
sample
...header=TRUE)
dads<-read.delim("males.txt", stringsAsFactors=FALSE,header=TRUE)
output_offspring<-data.frame()
for (i in 1:nrow(moms)){
rdad=sample(1:nrow(dads),1)
kid<-c(sample(moms[i,2:5],2),sample(dads[rdad,2:5],2))
output_offspring<-rbind(output_offspring,c(moms$SampleID[i],dads
$SampleID[rdad],kid))
}
write
.table
(output_offspring,"offspring_7.txt",row.names=T,col.names=T,quote=F)
females.txt:
SampleID A1 A2 A3 A4
GM920222 GATTGCC GATTGCC GATAGAC GATAGAC
GM930040 GTCATCA GAGTGCA ACTATAA GATTGCC
GM930040 GTCATCA GAGTGCA ACTATAA GATTGCC
GM960023 GATT...
2009 Jan 20
2
Merging tables
...y I have a table (csv - table 1) of data for a set of samples (rows), and a second table (table 2) of information about a subset of samples of particular interest. I want to pull out the data from table 1 for the samples in table 2, either by:
* Merging the two tables based on a common identifier (SampleID - may have a different header in the two tables), and filter for overlapping entries (preferred approach)
* OR filter table 1 for entries where SampleID matches to one in a list taken from table 2
Any help would be gratefully recieved.
-------------------------------------------------------------...
2010 Sep 23
1
merging multiple data frames
hi guys
i have multiple data frames which i want to merge.
there are four of them..eg
pdf
SampleID UVDose_J RepairHours Day_0 Day_45 Day_90
1 SDM001 1.0 3 485.612 465.142 490.873
2 SDM001 1.0 3 503.658 457.863 487.783
3 SDM001 1.0 2 533.193 451.044 456.973
4 SDM001 1.0 2 538.334 452.887 474.915
5 SDM001 1.0...
2010 Oct 26
3
Reading in a tab delimitated file
Hi all,
I have a total newbie question, but I could really use some help.
I need to read in this file:
SampleID Disease
E-CBIL-28-raw-cel-1435145228.cel 1
E-CBIL-28-raw-cel-1435145451.cel 2
E-CBIL-28-raw-cel-1435145479.cel 2
E-CBIL-28-raw-cel-1435145132.cel 3
E-CBIL-28-raw-cel-1435145417.cel 3
E-CBIL-28-raw-cel-1435145301.cel 2
E-CBIL-28-raw-cel-1435145558.cel 1
E-CBIL-28-raw-cel-1435145073.cel 3
E-...
2010 Sep 14
3
how to compute when row length is different
...1 B 47.5 41.5 29.0
10 SDM059 1 1 B 47.0 36.0 35.0
11 SDM059 2 1 B 41.5 42.0 32.5
12 SDM059 3 1 B 46.5 41.5 32.0
and the other one:
DF2
SampleId RepairHours Denatured Dose_uM Day_0_Read1 Day_0_Read2 Day_45_Read1
8 SDM071 0 1 C 124 120
108
9 SDM071 0 1 25 123 128
77
10 SDM071 0 1 50 132 138...
2012 Jun 28
1
Merging listed dataset into one
...T286300LU_D1_2010-07-24 ...
LT003990RU_D1_2010-11-04 (59 total)
varLabels: filenamesChannel1 filenamesChannel2 dates1 dates2
varMetadata: labelDescription channel
phenoData
rowNames: LT290677RU_D1_2011-02-16 LT286300LU_D1_2010-07-24 ...
LT003990RU_D1_2010-11-04 (59 total)
varLabels: sampleID tissue ... Annotation (5 total)
varMetadata: labelDescription channel
featureData: none
experimentData: use 'experimentData(object)'
Annotation: pd.feinberg.hg18.me.hx1
$v1.1
TilingFeatureSet (storageMode: lockedEnvironment)
assayData: 2197815 features, 17 samples
element names: chan...
2013 May 01
1
Combine multiple tables into one
...;- unique(c(a,b))
? >? squ <- matrix(rep(0,length(obs)^2),ncol=length(obs))
?? > for(i in 1:length(obs)){
? ? >? ? for(j in 1:length(obs)){
? >? ? ? ? ? squ[i,j] <- sum((a==obs[i])*(b==obs[j]), na.rm=TRUE)
? >? ? ? }
? >? }
? >? squ
>}
>
>#Mock data
>sampleid <- c(1:5)
>Q1before <- c(0,0,1,0,1)
>Q1after <- c(0,1,0,0,1)
>Q2before <- c(1,0,0,0,0)
>Q2after <- c(0,0,0,0,0)
>
>#This is what my real data looks like
>#It may be easier to reformat this df to a format that could then
use my create.table() function to ge...
2010 May 19
1
sample and rearrange
...hat all first letters of each column will be combined in one column,
all the second letters in a second column, all the third ones in a
third column and so on, resulting in 7 columns,
i.e. for the first individual (GM920222) GGGG AAAA TTTT TTAA GGGG CCAA
CCCC ?
Thank you very much,
Laetitia
SampleID A1 A2 A3 A4
GM920222 GATTGCC GATTGCC GATAGAC GATAGAC
GM930040 GTCATCA GAGTGCA ACTATAA GATTGCC
GM930040 GTCATCA GAGTGCA ACTATAA GATTGCC
GM960023 GATTGCC GTCATCA GATTGCC GATTGCC
GM920224 ACTAGAA GTCATCA GTCATCA ACTAGAA
GM920224 ACTAGAA GTCATCA GTCATCA ACTAGAA
GM920034 GATTGCC GTCATCA GATTGCA GATTGCA...
2008 May 14
6
PWGL in wine, problems
Hello,
I'm new on this list. First of all, thank you to all the developers of this
great project!
At the moment there is only an application that keeps me on both macos and
windows, its name is PWGL a free environment for computer assisted
composition in openGL. (http://www2.siba.fi/PWGL/)
I'm running Ubuntu 8.04 and wine 0.9.59.
I have to say that I also installed vcrun2005 and
2011 Feb 10
2
Rioja package, creating transfer function, WA, "Error in FUN"
...ms to this online. Is there a
step I've missed out between assigning the matrices and the WA function?
> SWED=odbcConnectExcel(file.choose()) (SWED is the environmental data
> file)
> sqlTables(SWED)
> Env=sqlFetch(SWED, "Sheet1")
> odbcClose(SWED)
> Env
SampleId WTD Moisture pH EC
1 "N1_1" "20" "91.72700" "3.496674" " 85.02688"
2 "N1_2" " 2" "93.88913" "3.550794" " 85.69465"
3 "N1_3" "26" "90.30269"...
2011 Feb 22
1
Transfer function observed vs predicted values graph problem
...egative values but the same thing
happens.
Does anybody know if there something I'm missing out? Or is there a way
that, if the values returned are less than 0, then they can automatically be
put just as 0?
Any help would be most appreciated,
Thank you,
Matthew
My environmental matrix (x) is:
SampleId WTD Moisture pH EC
1 "1" "20" "91.72700" "3.496674" " 85.02688"
2 "2" " 2" "93.88913" "3.550794" " 85.69465"
3 "3" "26" "90.30269" "3.948559" "113.19206&q...
2019 Oct 14
1
[PATCH] gm107/ir: fix loading z offset for layered 3d image bindings
...essSurfaceCoordsNVE4(TexInstruction *);
void processSurfaceCoordsNVC0(TexInstruction *);
- void convertSurfaceFormat(TexInstruction *);
+ void convertSurfaceFormat(TexInstruction *, Instruction **);
void insertOOBSurfaceOpResult(TexInstruction *);
Value *calculateSampleOffset(Value *sampleID);
diff --git a/src/gallium/drivers/nouveau/nvc0/nvc0_tex.c b/src/gallium/drivers/nouveau/nvc0/nvc0_tex.c
index f62e508258b..4948a8f4cea 100644
--- a/src/gallium/drivers/nouveau/nvc0/nvc0_tex.c
+++ b/src/gallium/drivers/nouveau/nvc0/nvc0_tex.c
@@ -1433,7 +1433,15 @@ gm107_create_image_handle(struc...