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...ile 2. Or Can Sweave direct the .tex output file to a nominated directory? I have tried Rscript -e setwd(shell('echo %outdir%',intern=T)) -e Sweave(.... to change the current working directory to %outdir% before invoking Sweave but this doesn't seem to work in batch mode. paul Paul Rustomji Rivers and Estuaries CSIRO Land and Water GPO Box 1666 Canberra ACT 2601 ph +61 2 6246 5810 mobile 0406 375 739

...ustralia.1252 attached base packages: [1] grid stats graphics grDevices utils datasets methods base other attached packages: [1] abind_1.1-0 rgdal_0.6-9 sp_0.9-37 gridBase_0.4-3 loaded via a namespace (and not attached): [1] lattice_0.17-25 tools_2.9.1 Paul Rustomji

...; $status [1] "" $major [1] "2" $minor [1] "10.1" $year [1] "2009" $month [1] "12" $day [1] "14" $`svn rev` [1] "50720" $language [1] "R" $version.string [1] "R version 2.10.1 (2009-12-14)" Paul Rustomji CSIRO Land and Water (Lucas Heights, NSW)

...need to figure out where file() opens the anoymous temporary file on your operating system. His is the same place as a call to tempdir() shows, e.g. on my Linux box: R> tempdir() [1] "/tmp/RtmpIzi6Yv" so it tries to write under /tmp. _____________________________________________ Paul Rustomji Rivers and Estuaries CSIRO Land and Water GPO Box 1666 Canberra ACT 2601 ph +61 2 6246 5810 mobile 0406 375 739

...off the loading of dependent packages so that I can only load the minimum ones I need? I understand I'll be carrying the risk of missing dependencies but in this case it is fairly straight forward as to why I need to do this and what specific packages are needed. Any suggestions? Paul Paul Rustomji Rivers and Estuaries CSIRO Land and Water GPO Box 1666 Canberra ACT 2601

...e seems to be a problem with Sweave trying to run an executable in one of the system's temp directories which the virus checker is then blocking. Has anyone else had any experience with this or have any tips as to what might be going on, least of all how to get around this? Thanks Paul. Paul Rustomji Rivers and Estuaries CSIRO Land and Water GPO Box 1666 Canberra ACT 2601 ph +61 2 6246 5810 mobile 0406 375 739

...mens per centimetre. The trouble I am having is getting the axis label string (last line of par.file) into R in a way that the mtext/bquote command understands. There seem to be issues around the quoting and perhaps the use of tildes "~" in the plotmath expression. Any ideas? Paul Paul Rustomji CSIRO Land and Water

...ia.1252;LC_CTYPE=English_Australia.1252;LC_MONETARY=English_Australia.1252;LC_NUMERIC=C;LC_TIME=English_Australia.1252 attached base packages: [1] stats graphics grDevices utils datasets methods [7] base loaded via a namespace (and not attached): [1] tools_2.9.1 Any ideas? Paul Rustomji

...were called/sourced/Sweaved as required. Sweaving within a code chunk seems to work a bit, but I've been having troubles getting graphs produced with the filenames I need. Any ideas - or is the only option to evaluation all code chunks but with the if statement *inside* the code chunk? Paul Rustomji Rivers and Estuaries CSIRO Land and Water GPO Box 1666 Canberra ACT 2601 ph +61 2 6246 5810 mobile 0406 375 739

...Saikat DebRoy <saikat at stat.wisc.edu>, Deepayan Sarkar <Deepayan.Sarkar at R-project.org>, the R Core team. Maintainer: R-core <R-core at R-project.org> Description: Fit and compare Gaussian linear and nonlinear mixed-effects models. Paul Rustomji Rivers and Estuaries CSIRO Land and Water GPO Box 1666 Canberra ACT 2601 ph +61 2 6246 5810 mobile 0406 375 739

..."POWERAPP4-WRON" machine login user "x86-64" "xxxxxx" "xxxxxx" $version.string [1] "R version 2.12.1 (2010-12-16)" Paul Rustomji Research Scientist CSIRO Land and Water Australia [[alternative HTML version deleted]]

Hello I would like to source an R script from within a C# .Net application equivalent to: source("my_r_code.r") I can get this to run but am not sure how to retrieve R objects defined with script my_r_code.r at runtime. For example, if "my_r_code.r" contains #-- contents of my_r_code.r--------------------- x <- 1:10 xmean <- mean(x)

Hello list Is there a way of identifying from within R whether a script has been source(d) from Rgui.exe or via Rscript.exe in batch mode? For the code I have I use the commandArgs() function to pick up command line args when running in batch mode via Rscript.exe However I like to get the code working manually first using source("MyRCode.r") I'd like to be able to put something at

...52;LC_NUMERIC=C;LC_TIME=English_Australia.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] xlsReadWrite_1.3.3 qualV_0.2-4 KernSmooth_2.22-22 loaded via a namespace (and not attached): [1] tools_2.8.1 Paul Rustomji Rivers and Estuaries CSIRO Land and Water GPO Box 1666 Canberra ACT 2601 ph +61 2 6246 5810 mobile 0406 375 739

...<- (sig>=0) if(sum(ind)) z$b[ind] <- pmin(pmax(0,z$b[ind]),3*pmin(abs(S0[ind]),abs(S1[ind]))) ind <- !ind if(sum(ind)) z$b[ind] <- pmax(pmin(0,z$b[ind]),-3*pmin(abs(S0[ind]),abs(S1[ind]))) z } ####################################### Paul Rustomji Rivers and Estuaries CSIRO Land and Water GPO Box 1666 Canberra ACT 2601 ph +61 2 6246 5810 mobile 0406 375 739

Hi group, I found a module for adaptive kernel density estimation for Stata users, but unfortunetly I don't have access to Stata, can I find a similar approach using R? Thank u so much 4 ur time. [[alternative HTML version deleted]]

...this do what you want? library(plotrix) barp(y,names.arg=0:14) Jim ------------------------------ Message: 5 Date: Mon, 29 Sep 2008 06:57:07 -0400 From: Duncan Murdoch <murdoch at stats.uwo.ca> Subject: Re: [R] problem running Sweave as a web service with anti-virus software To: Paul.Rustomji at csiro.au Cc: r-help at r-project.org Message-ID: <48E0B483.2000704 at stats.uwo.ca> Content-Type: text/plain; charset=ISO-8859-1; format=flowed On 29/09/2008 2:01 AM, Paul.Rustomji at csiro.au wrote: > Hello R mailing list > > We are trying to use R and Sweave, running as a web...