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rui_frs
2013 Apr 24
1
RDA permutest envfit
...the envfit function, some of the vectors are significant. All the test's conditions are respected. What it means? Is it an error in the script?
Commands and output:
> permutest(rda.ind, perm=999, first=TRUE)
Permutation test for rda
Call: rda(formula = x ~ ARH_frs + CON_frs + PRP_frs + RUI_frs + VAM_frs, data = z)
Permutation test for first constrained eigenvalue
Pseudo-F: 4.093568 (with 1, 10 Degrees of Freedom)
Significance: 0.413
Based on 999 permutations under reduced model.
> fit <- envfit(rda.ind, z, perm = 999, display = "lc")
> fit
***VECTORS
...