search for: rstenberg

Hi all, Anyone experienced in the LaTeX format? I'm trying to use the xtable package to create nice anova tables, but how do I do to produce a pdf from the resulting LaTeX table? I've tried WinShell and MiKTeX, but I couldn't get any of them working... Here's an example of the output in R: % latex table generated in R 2.9.2 by xtable 1.5-6 package % Tue Nov 24

Hi all, Probably a simple question, but I just can't find a simple answear in the older threads or anywhere else. I've added some new vectors as columns in a data frame using cbind(). As they're all put as the last columns inte the data frame, I would like to move them to specific positions. How do you do to change the position of a column in a data frame? I know I can use

Hi all, I guess this might be an easy question, but I've searched multiple help pages without finding any answear... so now I put my trust in you! I have a data frame (36 variables and 556 observations). One column contains three factors, and I would like to divide the data frame into three new ones, based on the value of the factors, thereby having only one value for all elements of the

Hi all, I've tried to make a 3D plot, but have run into some problems. I'd like to have a plot that I can rotate interactively using the mouse, which is possible using the plots3d {R.basic}. However, I would like to change the symbols used as the points, but there's no pch in plot3d(). If I use the Scatterplot3d package, I'm able to change this, but not able to rotate

Hi all, I would like to remove rows from a matrix, based on the frequency of missing values. If there are more than 10 % missing values, the row should be deleted. I use the following to calculate the frequencies, thereby getting a new matrix with the frequencies: freqNA=rowMeans(is.na(exprdata)) But is there a shorter way to remove the rows based on "(1-freqNA)>0.1"

Hello everybody, I'm using the lattice package and the xyplot to make several graphs like below. However, I can just print the three grouped plots onto one page as I'm putting them into a pdf-file, which gives me a huge amount of pages... Is it possible to put them all, or at least more than one on the same page, for instance put three groups beside each other like columns? ...

Hi all, I need to replace missing values in a matrix by 10 % of the lowest available value in the matrix. I've got a function I've used earlier to replace negative values by the lowest value, in a data frame, but I'm not sure how to modify it... nonNeg = as.data.frame(apply(orig.df, 2, function(col) # Change negative values to a small value, close to zero { min.val =

Hi all, I'm trying to write a script that changes all negative values in a data frame column to a small positive value, based on the the minimum value of the column. However, I get the following error: Error in if (x[i] < 0) { : argument is of length zero As well, I would "minimum" to be the smallest of the non-negative values...

Hi all, I'm have a matrix (X) with observations as rows and parameters as columns. I'm trying to exchange all missing values in a column by the column mean using the code below, but so far, nothing happens with the NAs... Can anyone see where the problem is? N<-nrow(X) # Calculate number of rows = 108 p<-ncol(X) # Calculate number of columns = 88 # Replace by columnwise

Dear all, I have a data frame in which the columns need to be ordered. The first column X is at the right position, but the remaining columns X1-Xn should be ordered like this: X1, X2, X3 etc instead of like below. > colnames(pos1) [1] "X" "X1" "X10" "X11" "X12" "X13" "X14" "X15" "X16"

...20 [util-linux] util-linux: rc.d entries clobbered Bug #473202 [util-linux] util-linux: Don't readd hwclock init script on upgrades Changed Bug submitter to 'J?rg Sommer <joerg at alea.gnuu.de>' from 'J??rg Sommer <joerg at alea.gnuu.de>' > submitter 478981 Carl F?rstenberg <azatoth at gmail.com> Bug #478981 [iceweasel] Iceweasel jumps focus over viewports when opening a page using external call Bug #486570 [iceweasel] iceweasel moves from one desktop to another when link in psi is clicked Bug #513781 [iceweasel] iceweasel: -new-tab steals window focus Changed B...

Hi all, I'm doing Multiple linear regression for a data set. However, it takes a lot of time, as I would like to check every possible combination of factors, evalute the results based for instance on their p values, and then choose the best regression model. So, I wonder if anyone might have a script for that? Or if not, do you have some suggestions how to create such a script? I've

Hi all, I want to calculate the row wise mean of groups of columns in a matrix M. All columns belonging to the same group have the same column name. My idea is to create a new vector V containing these column names, but after first removing the duplicates. Then I would calculate the means using for instance rowMean() and by comparing the column names of M with the vector V, getting the indices

Hi all, I'm searching for a way to exclude outliers from my dataset while making xyplots. While plotting using pairs(), I exclude specific row in my data frame and save the settings as a variable which I later include as an argument: # Discard outliers and save settings as idx idx=with(fieldTrial0809, which(Pro>0 & Pro<0.95 & Fum>0 & Fum<0.4 & Mal>0.1 &

Hi all, Does any of you know how to make a decision tree when the data set contains factors and numericals? I've got a data frame with 3 columns, where y and x1 are numerical and x2 contains factors. Is it possible to use the rpart package, and in that case how? Otherwise, is there another alternative? This is what I've tried so far > rpart(LT50_NA ~ Raf + Antho,

Hi all, I have two question. First, I wonder how to remove a part of the column names in a matrix? I would like to remove the "_ACCX" or "_NAX" part below. Is there a method where the "_" as well as all characters after i can be removed? > dim(exprdata) [1] 88 512 > > colnames(exprdata[,c(1:20)]) [1] "Akita_ACC1" "Akita_ACC2"

Hi all, Does anyone know how to get the independent components and loadings from an Independent Component Analysis (ICA), as well as principal components and loadings from a Pricipal Component analysis (PCA) using the fastICA package? Or perhaps if there's another way to do ICAs in R? Below is an example from the fastICA manual (http://cran.r-project.org/web/packages/fastICA/fastICA.pdf)

Hi, I've got a data frame (556 rows and 36 columns) from which I need to create several xy plots and print to pdf, in order to detect outliers and trends in the data. 16 of the columns contains numerical values, and I would like to create graphs for all combinations. It can be done manually, but creating 256 plots by hand takes time... I guess I have to iterate through the data frame, but

Hi all, I'm making a PCA plot with eight variables (columns taken from a larger data frame "fieldTrial0809[idx,c(39:46)]"). I then want the symbols in the plot to be colored as a gradient from red to blue, depending on the value of another column in "fieldTrial0809[idx, c(48)]" containg temperatures from -12.1 to -5.4. I don't want to use the heat.colors(n)

Hi all, I've got some problems when changing the trellis settings for the lattice plots. The plots look exactly as I want them to when calling show.settings() as well as when plotting them in the graphical window. But when printing to a pdf file, none of the settings are used!? Does anyone know what might have happened? Because the when changing the trellis settings, these should remain in