Displaying 3 results from an estimated 3 matches for "rsnps".
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snps
2024 Nov 15
1
R coding to extract allele frequencies from NCBI for ALL alleles of one SNP?
...- but not necessary). Does there exist a package in R with coding which could extract the data from NCBI for all the alleles of one SNP ? I've looked at getBM() from package biomaRt and searched via Google and Copilot- so far with no success. Many thanks.
remotes::install_github("ropensci/rsnps")
library("rsnps")
# Define the SNP ID
snp_id <- "rs11134679" ## this SNP has alleles A, C, G and T, but results are only for A
# Query the dbSNP database
result <- rsnps::ncbi_snp_query(snp_id)
result2 <- as.data.frame(result)
result2
result2$maf_population
[[...
2014 Dec 08
2
CRAN packages mis-using \donttest : falsy
...RISMA RSurvey RandomFields ReporteRs Rmpi Rssa TR8 VarEff
> aoristic breakage dplyr effects ftsa geocodeHERE ggHorizon ggmap
> ggtern gvcm.cat hyperSpec knitcitation knitr mboost mets mfblock
> mobForest mra nontarget npRmpi nullabor openNLP parfm plsRbeta powerr
> pxweb rcrossref rgbif rsnps season spMC spgwr spocc taxize timereg
> toaster
>
> and warnings in DSpat
>
> In almost all cases there is something obviously wrong with the
> failing example.
>
> Please submit an update to CRAN (using the webform, and following the
> CRAN policies at http://cran.r-pro...
2014 Dec 08
0
CRAN packages mis-using \donttest : falsy
...Fields ReporteRs Rmpi Rssa TR8 VarEff
> > aoristic breakage dplyr effects ftsa geocodeHERE ggHorizon ggmap
> > ggtern gvcm.cat hyperSpec knitcitation knitr mboost mets mfblock
> > mobForest mra nontarget npRmpi nullabor openNLP parfm plsRbeta powerr
> > pxweb rcrossref rgbif rsnps season spMC spgwr spocc taxize timereg
> > toaster
> >
> > and warnings in DSpat
> >
> > In almost all cases there is something obviously wrong with the
> > failing example.
> >
> > Please submit an update to CRAN (using the webform, and following the...