search for: rrna

Hi, I have a CSV file with various biological reactions. Subscripts, superscripts, and italics are encoded in carats, and I was wondering if R can actually recognize those and print actual superscripts, etc. Here's an example: <i>S</i>-adenosyl-L-methionine + rRNA = <i>S</i>-adenosyl-L-homocysteine + rRNA containing <i>N⁶</i>-methyladenine Thanks, -Nina

...size=list(text=8), superpose.polygon = list(border = 'black', col = c('white', 'gray', 'black'))), par.strip.text = list(cex=0.9), auto.key = list(space = 'top', columns = 3, cex = 0.7), # key = key.variety, # index.cond = list(c('tRNA', '5S rRNA', 'SRP RNA', 'RNase P', '16S rRNA')), # index.cond = list(rep(1,6)), # ylim = my.ylim, scales = list(x = list(rot = 45), y=list(tck = 0.4, rot = 0, relation = 'free')), ly = benchmark$Score - benchmark$Error, uy = benchmark$Score + benchmark$Error, prep...

Hi, I'm trying to calculate a ratematrix for a RNA aligment (U instead of T) in order to use it as a ratematrix in Profidst (a phylogenetic program which takes into account both the primary sequence and the secondary structure of the RNA, in my case rRNA). The sequence-structure aligment has been made in 4SALE (a java app) and saved as one-letter encoded (using a 12 letters alphabet, "a","c","d","e","g","h","i","k","l","n","q","r"...