search for: rpacks

R : Copyright 2002, The R Development Core Team Version 1.5.1 (2002-06-17) > install.packages("O:/Rpack/mscalib.zip", .libPaths()[1], CRAN = NULL) updating HTML package descriptions Warning message: error -1 in extracting from zip file > install.packages("O:/Rpack/zzz.zip", .libPaths()[1], CRAN = NULL) updating HTML package descriptions Warning message: error -1 in

...After installing all the components - Rtools, Active Perl, and minGW I created the file structure using package.skeleton(name = "test") with only the functions i want in the package in memory. I subsequently filled in the relevant details in Description and tried to call Rcmd check. C:\rpacks>Rcmd check test * checking for working latex ... OK * using log directory 'C:/rpacks/test.Rcheck' * checking for file 'test/DESCRIPTION' ... OK * checking if this is a source package ... OK make: *** No rule to make target `pkg-test'. Stop. *** Installation of test failed...

...Rcmd (in windows 2000 professional with R 1.8.1). I have made some progress - and now at least Rcmd check works - it still giving me an error message when it creates latex help files though. Thus I get: c:\rpack> Rcmd check test * checking for working latex ... OK * using log directory 'C:/rpacks/test.Rcheck' * checking for file 'test/DESCRIPTION' ... OK * checking if this is a source package ... OK ---------- Making package test ------------ adding build stamp to DESCRIPTION installing R files installing man source files installing indices installing help >>&g...

Hi! Where to set R_LIBS? I have .Renviron with the line. R_LIBS=/package/R/R-1.5.0/linux/lib/R/library/;/home/wolski/Rpack/ in my home directory but cant access any library stored in the /home/wolski/Rpack/? Eryk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info",

Dear Sir, I am Vijaya, working as a research assistant in one small research organisation named IBAB in India. Here is my problem, after installing RSPerl in linux, I tried to test it by executing test.pl program which is present in RSPerl/script directory but I am getting the following error Can't load '/usr/lib/perl5/site_perl/5.8.8/i386-linux-thread-multi/auto/R/R.so'

Hi, After installing RSPerl module, when I tried to test the module, I am getting the following error. Can't load '/usr/lib/perl5/site_perl/5.8.8/i386-linux-thread-multi/auto/R/R.so' for module R: /usr/lib/perl5/site_perl/5.8.8/i386-linux-thread-multi/auto/R/R.so: undefined symbol: R_ClassSymbol at /usr/lib/perl5/5.8.8/i386-linux-thread-multi/DynaLoader.pm line 230. at rpack.pl

Dear Sir, I am Vijaya, working as a research assistant in one small research organisation named IBAB in India. Here is my problem, after installing RSPerl in linux, I tried to test it by executing test.pl program which is present in RSPerl/script directory but I am getting the following error Can't load '/usr/lib/perl5/site_perl/5.8.8/i386-linux-thread-multi/auto/R/R.so'

...have internet connection. I downloaded some packages manually and I installed it from source using the command R CMD INSTALL and it's work but in some cases I can't install the package because of the dependencies. So I download all the R packages into a directory for example /home/joel/RPacks. Is it possible to configure the R commands (i.e. CMD INSTALL command or install.packages() function) in order that R looks for dependencies in my repository. Thanks in advance, Best Regards - Cordialement, Joël ----------------------------------------------------------------------- Jo...

We have R 2.2.1 installed on a Linux cluster that seems to have problems loading either of our shared object libraries for packages. This seems to be happening on both local and global versions of packages that we install. However, we have only noticed this problem in the past 3 months on this R installation, whereas some users had success before then. It could be that something on our system

...user effective_user "jmao" "jmao" ##################################################################### # (4) prompt from phyloclim installation > install.packages("phyloclim") Installing package(s) into ‘/ebio/abt6/jmao/R/Rpacks’ (as ‘lib’ is unspecified) also installing the dependencies ‘gee’, ‘tkrplot’, ‘ape’, ‘adehabitat’ trying URL 'http://mirrors.softliste.de/cran/src/contrib/gee_4.13-18.tar.gz' Content type 'application/x-gzip' length 57162 bytes (55 Kb) opened URL ===================================...

...parate packages that have a Makefile in inst/doc which use the R_HOME variable. In both cases, the path to R_HOME gets munged in such a way that commands that include R_HOME fail on Windows: For example, one Makefile, for the xmapcore package ( https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/xmapcore/username/password: readonly) has this: R=${R_HOME}/bin/R SUITE=../cookbook/delia.R [...] ${R} --vanilla --verbose < ${SUITE} the output of trying to build this package includes: * creating vignettes ... ERROR E:\biocbld\BBS-2~1.8-B\R/bin/R --vanilla --verbose < ../cookbook/delia.R...

...GNU Linux. Could you give me any directions on that? There is maxent.jar in version 3.3.3e in the right folder. ######################################## R: > jar <- paste(system.file(package="dismo"), "/java/maxent.jar", sep='') > jar [1] "/ebio/abt6/jmao/rpacks/dismo/java/maxent.jar" Terminal: jmao at upa:~/rpacks/dismo/java$ ls maxent.jar mebridge1.jar mebridge2.jar ######################################## Thank you in advance. Here is my info: ########################################################### # (1) the error > me <- maxent(pred...

...ted in software packages that use templates for the annotation packages to be generated. Those package templates are stored under the inst/ folder of the software package. One of those software packages is the AnnotationDbi package: it contains 41 package templates under inst/: [hpages at latitude Rpacks]$ ls AnnotationDbi/inst/AnnDbPkg-templates/ AFFYHUEX.DB CHIMP.DB MALARIA.DB WORM.DB ANOPHELES.DB COELICOLOR.DB MOUSECHIP.DB XENOPUSCHIP.DB ARABIDOPSISCHIP.DB ECOLICHIP.DB MOUSE.DB XENOPUS.DB ARABIDOPSIS.DB ECOLI.DB ORGANISM.DB YEASTCHIP.DB BASEPKG.DB...

Dear developers, I have a small but more or less well defined inquiry. Another, more general one for which I was not able to find information is towards the end of this messages. The question seems to be too technical for R-help, that is why I post it here. When installing packages (Windows XP), occasionally the installation does not complete because, it seems, Windows locks some files.

...- "Unsuffered Consequences" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-unknown-linux-gnu (64-bit) trying to check the Bioconductor genefilter package leads to $ Rdev --vanilla CMD check genefilter_1.47.5.tar.gz * using log directory ?/home/mtmorgan/b/Rpacks/genefilter.Rcheck? * using R Under development (unstable) (2014-06-13 r65941) * using platform: x86_64-unknown-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ?genefilter/DESCRIPTION? ... OK * this is package ?genefilter? version ?1.47.5? * checking package namespace informati...

I'm creating my own package for personal and I'm having trouble getting it to a point where R (v 2.3.1) will recognise it. I've followed two different tutorials for how to create the package structure and the DESCRIPTION file ( http://web.maths.unsw.edu.au/~wand/webcpdg/rpack.html , http://www.maths.bris.ac.uk/~maman/computerstuff/Rhelp/Rpackages.html#Lin-Lin ). I'm still getting

Dear list, It seems that a package (pkgB) using another package (pkgA) with S4 generics formed by taking existing functions (for example 'plot') must not import the existing functions ('plot') in its namespace to avoid the warning "replacing previous import: plot". Suppose we use the simple 'import' directive in the name space of pkgB. pkgA and pkgB files would

Windows XP. I have just updated to R 2.11.0 and then run update.packages. In the series of updates, a few will succeed, then I get a failure like package 'mvtnorm' successfully unpacked and MD5 sums checked package 'party' successfully unpacked and MD5 sums checked package 'PBSmodelling' successfully unpacked and MD5 sums checked Error in normalizePath(path) :

...in: /home/rossini/Runpacked I thought I could do something like: install.packages("MyUnPackedRPackage", # top package name lib="/home/rossini/lib/R", # where I'd like to install destdir="/home/faculty/rossini/sandbox/madman/Rpacks") ## assuming ## this is where it goes. But this isn't the right incantation. I know that I could simply shell out using system, i.e. system("R CMD install /path/to/dir"), but is there a cleaner way? best, -tony -- A.J. Rossini Rsr...

I am trying to install two R packages to produce cartograms like in the work of Gastner and Newman: http://www.pnas.org/content/101/20/7499.full.pdf but I have a problem installing Rcartogram and rdyncall packages. Both are not available in CRAN and have to be installed from archivea and produce errors: > install.packages("C:/Users/Milena/Downloads/*Rcartogram*_0.2-2.tar.gz", >