search for: rockefel

...P1,SNP2) > dim(GT) NULL # why?????????????????????????????????????? > GT[2,,] <- pmax(SNP1,SNP2) Error in GT[2, , ] <- pmax(SNP1, SNP2) : incorrect number of subscripts Knut M. Wittkowski, PhD,DSc ---------------------------------------------------- Sr Research Associate, The Rockefeller University Biometrician, The Rockefeller University Hospital Director, Biostatistics/Epidemiology/Research Design Center for Clinical and Translational Science (CCTS) apl. Professor, Eberhard-Karls-University, Tübingen 1230 York Ave #121B, Box 322, New York, NY 10021, US Tel: +1 (212) 327-71...

...the user that I am connecting as has permissions to open these folders (I checked from another machine). Testparm yields no problems, and I can l Here is an except of the error (NT_STATUS_PATH_NOT_COVERED) in context: [bioinfo@array30 bioinfo]$ smbclient -d1 -A ~/.smbcred -I 129.85.1.211 "//rockefeller.edu/genearray" [2003/11/20 05:45:41, 1] client/client.c:do_connect(2598) Domain=[ROCKEFELLERNT] OS=[Windows Server 2003 3790] Server=[Windows Server 2003 3790] smb: \> cd "Test Lab" smb: \Test Lab\> pwd Current directory is \\rockefeller.edu\genearray\Test Lab\ smb: \Test...

...URL: http://openssh.org/txt/draft-ietf-secsh-publickeyfile- 02.txt OS/Version: All Status: NEW Severity: normal Priority: P2 Component: ssh-keygen AssignedTo: bitbucket at mindrot.org ReportedBy: pepper at rockefeller.edu ssh-keygen cannot import files with DOS-style line endings (CR/LF). This appears to be a violation of draft-ietf-secsh-publickeyfile-02, which says all line-break styles MUST be supported. I initially noticed this with a key created on VMS, using DOS-style line breaks, and confirmed with...

...em inums, 64-bit internal inums > >rsync comes with ABSOLUTELY NO WARRANTY. This is free software, and you >are welcome to redistribute it under certain conditions. See the GNU >General Public Licence for details. -- Chris Pepper: <http://www.reppep.com/~pepper/> Rockefeller University: <http://www.rockefeller.edu/>

Hi, I just try to draw multiple plots in one page using R, I used par command. For example I have 7 plots, but instead of arranging them in the default way plot1 plot2 plot3 plot4 plot5 plot6 plot7 I want them in this order plot1 plot2 plot3 plot4 plot5 plot6 plot7 Could somebody tell me how to do this, please? Thanks so many. Suyan

...* Missing gem dependencies in Rails 0.13.1 Max bundle are now included Get it at: http://prdownloads.sourceforge.net/locomotive/Locomotive_0.2.4.dmg?download If you have any further questions, head on over to the website: http://locomotive.sourceforge.net Cheers, Ryan -- Ryan Raaum http://www.rockefeller.edu -- Bacterial Pathogenesis and Immunology http://www.worldmartial.com -- Black Belt Instructor http://locomotive.sourceforge.net -- Self contained one-click Rails for Mac OS X

...gory Chaitin (http://www.umcs.maine.edu/~chaitin/lm.html) mentioned that there can be no proof that a given code is the shortest for a problem, even within a language. Still, the script below, a replacement of the "TDT", one of the most frequently used tests in genetics (http://mustat.rockefeller.edu under "downloads") may get close. It contains a few additional bytes for clarity, as in (2^1) for 2, but, otherwise, I don't think one could make this much shorter, especially the part that does the exact distribution. I'm looking forward to comments on improving the pr...

...uration problems then I will gladly follow up with that information. A quick capture of the smbclient problem is below. This is a self compiled version, and I removed the previously installed binary (so no conflicts). [bioinfo@array30 bioinfo]$ smbclient -d1 -A ~/.smbcred -I 129.85.1.211 "//rockefeller.edu/genearray" [2003/11/20 05:45:41, 1] client/client.c:do_connect(2598) Domain=[ROCKEFELLERNT] OS=[Windows Server 2003 3790] Server=[Windows Server 2003 3790] smb: \> cd "Test Lab" smb: \Test Lab\> pwd Current directory is \\rockefeller.edu\genearray\Test Lab\ smb: \Test...

...ll else fails, read the help page... ?fivenum says to look at ?boxplot.stats, and the "Details" section of ?boxplot.stats has, well, details. Tukey had reasons to call those hinges rather than quartiles. Andy > -----Original Message----- > From: Knut M. Wittkowski [mailto:kmw at rockefeller.edu] > Sent: Thursday, May 29, 2003 5:58 PM > To: Matthias Kirschner > Cc: R-help at stat.math.ethz.ch > Subject: Re: [R] R summary (and quantiles) > > > Matthias > > The function "fivenum", defines quantiles by assuming that > the i-th order > sta...

...ox.exact(x1,x2,alternative="two.sided") Exact Wilcoxon rank sum test: p-value = 0.05556 S> wilcox.test(x1,x2,alternative="two.sided") Exact Wilcoxon rank sum test: p-value = 0.0556 Knut M. Wittkowski, PhD,DSc ------------------------------------------ The Rockefeller University, GCRC 1230 York Ave #121B, Box 322, NY,NY 10021 +1(212)327-7175, +1(212)327-8450 (Fax) kmw at rockefeller.edu http://www.rucares.org/statist/

Hello, I am analysing several samples whose sizes are from 9 to 110. I would like to test their distribution with R, whether they are normal or not. I wonder which test for normality from R should I use . Thank you for help. Samuel Samuel BERTRAND Doctorant Laboratoire de Biomecanique LBM - ENSAM - CNRS UMR 8005 151, bd de l'Hopital 75013 PARIS Tel. +33 (0) 1 44 24 64 53 Fax +33 (0) 1

Hi, everyone: I forget on how to save a result from R as a word document. For example, if I run the linear regression and want to save the result: summary(lm(y~x) in a word file. So I can show it later to my clients. Any idea on how to do this? Thanks a lot, Suyan

Dear all i use R only a few days and don't understand the difference between fivenum(x) und summary(x). > x [1] 20.77 22.56 22.71 22.99 26.39 27.08 27.32 27.33 27.57 27.81 28.69 29.36 [13] 30.25 31.89 32.88 33.23 33.28 33.40 33.52 33.83 33.95 34.82 > fivenum(x) [1] 20.770 27.080 29.025 33.280 34.820 > summary(x) Min. 1st Qu. Median Mean 3rd Qu. Max. 20.77 27.14

David A. Paul wrote: > I don't have the reference, but a biologist friend of mine once > showed me a refereed journal article that purported to demonstrate > numerical errors made by MSExcel. This would have been Excel97 or > Excel2000... In any case, the journal's scope was biological in > nature and the article was of interest since Excel is heavily used in > that

Hi, I'm wondering if anyone can point me to a function that will allow me to do a ranking that treats ties differently than rank() provides for? I'd like a method that will assign to the elements of each tie group the largest rank. An example: For the vector 'v', I'd like the method to return 'rv' v: 1 2 3 3 3 4 5 5 6 7 rv: 1 2 5 5 5 6 8 8 9 10 Thanks,

Hi, I recently noticed that a relativly short wav file loses the last second (truncated perhaps) when I ran it through oggenc. Originally the wav was 25 seconds, the ogg is 24 seconds. This happens at various quality levels, and I saved several copys of the file on a webserver at http://array26.rockefeller.edu/www/ogg/ If anyone wants to confirm my observations. The command lines were: oggenc -l offspring -a offspring -q 9 "01 - Time to Relax.wav" \ -o "01 - Time to Relax-q9.ogg" oggenc -l offspring -a offspring -q 4 "01 - Time to Relax.wav" \ -o "01 - Time...

...kup or something like that, but for now I'm just trying to get CGI behavior for Markdown.pl or markdown.php. ;) Regards, Chris Pepper -- Chris Pepper: <http://www.reppep.com/~pepper/> <http://www.extrapepperoni.com/> The Rockefeller University: <http://www.rockefeller.edu/>

Hi Everyone: I need some help on combining two datasets into one. Since for those two datasets, there are different variables. Like In dataset 1, I have pt x1 x2 1 12 24 2 20 17 In dataset 2, I have pt x2 x3 3 19 33 4 20 16 The final dataset I want should look as pt x1 x2 x3 1 12 24 NA 2 20 17 NA 3 NA 19 33 4 NA 20 16 I used setdiff and rbind together and got what I

Hi, I would like to do a MannWitney test. Can anyone help me with the propper command? Thanks, Margarida

Hi: I love Locomotive and use it exclusively for my rails projects. I''d like to install GRUFF and give it a try (a graph image creation package). I know I can do sudo gem install gruff from the command line for normal ruby and rails. How do I make gems available to Locomotive? bruce