search for: rnetcdf

On a Red Hat Linux cluster I am seeing the following after multiple other packages were successfully installed. The error seems to suggest that RNetCDF.o was not copied to the appropriate lib folder. The admin user performing the install has the required privileges to perform the install. Words of wisdom are greatly appreciated: R CMD INSTALL --configure-args="--with-netcdf-include='/soft/local/netcdf/netcdf-3.6.2/include/' --with-ne...

Hello all, I set 'UDUNITS_PATH' and 'NETCDF_PATH' successfully to my custom places and then % R CMD INSTALL RNetCDF_1.1-3.tar.gz and got this: ... checking for executable suffix... checking for object suffix... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for main in -lnetcdf... yes checking for main in -ludunits... yes checking for /Users/zpzhang/r...

Dear R users who might like to use the package RNetCDF on Fedora Linux: Fedora (versions 4 and 5) users might have noticed that the default install of the netcdf and netcdf-devel packages from the Fedora Extra archive is inconsistent with the R package RNetCDF. The attempt to install RNetCDF results in a failure in the configure stage because the...

Dear Pavel Michna [maintainer of the package] (and copy to R-help Mailing List) When I try to load the package RNetCDF (after install from CRAN) I get this message: > library("RNetCDF", lib.loc="/Library/Frameworks/R.framework/Versions/3.0/Resources/library") Error : .onLoad a ?chou? dans loadNamespace() pour 'RNetCDF', d?tails : appel : NULL erreur : I/O error (udunits) Erreur : l...

Dear RNetCDF developers, I haven't been able to load RNetCDF in R for a while. I wonder if this is a bug or a problem with my installation. I'm using Debian testing. > library(RNetCDF) Segmentation fault 5:01pm(dongda)~>R --version R 2.2.0 (2005-10-06). Copyright (C) 2005 R Development Core...

Greetings all, I recently tried to install RNetCDF from within R (install.packages) on Fedora Core 8 (with netcdf 3.6.2 and netcdf-devel 3.6.2 already installed). This resulted in an error because the netcdf header files are installed in /usr/include/netcdf-3 rather than /usr/include which is where RNetCDF looks for them. This problem was descri...

Dear List, does anybody has experience with the RNetCDF package? I manage to open a connection and copy data from a ncdf file but would need a way to automatically retrieve variable names (ideally all of them from one file) and units from the file. Any ideas? Jannis

Dear R community, I quite frequently run into errors while using the RNetCDF package which do not seem to be recognised as normal R errors and, hence, do not stop the execution of the code making it hard to debug the code. Consider, for example: library(RNetCDF) con <- create.nc('test.nc') test <- try(var.get.nc(con, 'dummy')) In this case, some...

I have a problem with the RNetCDF package in MacOSX 10.8.3, R3.0.0. If you have a solution, it would be great ! Thanks a lot. Marc Girondot > install.packages("RNetCDF") essai de l'URL 'http://cran.at.r-project.org/bin/macosx/contrib/3.0/RNetCDF_1.6.1-2.tgz' Content type 'application/x-gzip' leng...

...f-3/ncvalues.h /usr/include/netcdf-3/netcdf.h /usr/lib/netcdf-3/libnetcdf.a /usr/lib/netcdf-3/libnetcdf_c++.a /usr/lib/netcdf-3/libnetcdf_g77.a Last week I posted in this list that I re-built the Fedora-Extras netcdf rpm so that it would have more standard installation, and then I was able to make RNetCDF work. In the meanwhile, I posted in bugzilla.redhat.com asking if they might use the standard packaging, but their response is an adamant refusal: https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=189734 When netcdf updates are issued in the Fedora-Extras network, the special hacks I put in...

Friends, Someone please share your experience in installing ncdf and RNetCDF in fedora10. I am not able make it work as it throws me the following error. My R version is 2.8.0. > library(ncdf) unable to load shared library '/usr/lib/R/library/ncdf/libs/ncdf.so': /usr/lib/R/library/ncdf/libs/ncdf.so: cannot restore segment prot after reloc: Permission denied...

Hello - I am having trouble extracting data from NetCDF data files using RNetCDF. The data files each have 3 dimensions (longitude, latitude, and a date) and 3 variables (latitude, longitude, and a climate variable). Here is some of the output from print.nc for clarity: ----- dimensions: month = UNLIMITED ; // (1368 currently) lat = 3105 ; lon = 7025 ; varia...

Dear all, I would like to announce the availability of a new package on CRAN: RNetCDF: R Interface to NetCDF Datasets This package provides an interface to Unidata's NetCDF library functions (version 3) and furthermore access to Unidata's udunits calendar conversions. The routines and the documentation follow the NetCDF and udunits C interface, so the corresponding manuals...

Dear all, I would like to announce the availability of a new package on CRAN: RNetCDF: R Interface to NetCDF Datasets This package provides an interface to Unidata's NetCDF library functions (version 3) and furthermore access to Unidata's udunits calendar conversions. The routines and the documentation follow the NetCDF and udunits C interface, so the corresponding manuals...

...fine). For better overview I'd like to delete/remove some of the attributes. Is there a simple way doing this? I'm using the package netcdf4, which creates an object of class(nc) = "ncdf4". It seems that for earlier versions of netcdf objects, there was the function att.delete.nc{RNetCDF}. But this functions returns the following error, when applied to ncdf4-classes: Error: class(ncfile) == "NetCDF" is not TRUE Thanks a lot for any help. Kind regards Raphael Felber ------------------------------------------------------------------------------------ Raphael Felber, Dr....

...: Mittwoch, 2. August 2017 15:13 An: Felber Raphael Agroscope <raphael.felber at agroscope.admin.ch> Betreff: Re: AW: [R] Remove attribute from netcdf4 object ok. Sorry, I didn't understood good. I don't think you can do it in ncdf4 functions. The only solution would be to open it in RNetCDF, delete the attribute, save it and then open it in ncdf4. Marc Le 02/08/2017 ? 15:02, raphael.felber at agroscope.admin.ch<mailto:raphael.felber at agroscope.admin.ch> a ?crit : Dear Marc Thanks for your remark. I don't want to use both packages. I mentioned the package RNetCDF to show...

Dear Marc Thanks for your remark. I don't want to use both packages. I mentioned the package RNetCDF to show that there is a similar function I' d like to use. Raphael Von: Marc Girondot [mailto:marc.girondot at u-psud.fr] Gesendet: Mittwoch, 2. August 2017 14:51 An: Felber Raphael Agroscope <raphael.felber at agroscope.admin.ch>; r-help at r-project.org Betreff: Re: [R] Remove attribu...

Saludos estimados usuarios ! Estoy recién iniciándome en R y no he encontrado ejemplos de cómo graficar los archivos netcdf que genera el modelo meterológico WRF. ¿Alguien tiene por ahí algunos scripts que me permitan ir interiorizándome en el uso de paletas de colores, mapas y graficas de variables de este modelo? Anteriormente lo hacía vía GrADS, convirtiendo el NetCDf a GRIB, pero con las

...am with this, apologies in case it's a bother. I'm trying gcc 6.2.1 (from devtoolset-6) with R, everything seems to work just fine, except for mzR. Here is failed build: g++ -m64 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o mzR.so cramp.o ramp_base64.o ramp.o RcppRamp.o RcppRampModule.o rnetCDF.o RcppPwiz.o RcppPwizModule.o RcppIdent.o RcppIdentModule.o ./boost/system/src/error_code.o ./boost/regex/src/posix_api.o ./boost/regex/src/fileiter.o ./boost/regex/src/regex_raw_buffer.o ./boost/regex/src/cregex.o ./boost/regex/src/regex_debug.o ./boost/regex/src/instances.o ./boost/regex/src...

...r better overview I'd like to delete/remove some of the attributes. Is there a simple way doing this? > > I'm using the package netcdf4, which creates an object of class(nc) = "ncdf4". It seems that for earlier versions of netcdf objects, there was the function att.delete.nc{RNetCDF}. But this functions returns the following error, when applied to ncdf4-classes: > Error: class(ncfile) == "NetCDF" is not TRUE You should use package ncdf4 or package RNetCDF, but not mixed both. Marc > > Thanks a lot for any help. > > Kind regards > > Raphael Felber...