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2011 Nov 21
1
readDGE: Error in colnames/length of dimnames not equal to array extent
Hello, all, I'm a new R user (new to any programming language in general, really), so I apologize if this is easy/has already been answered (I've attempted searching online but did not understand the pages I found). My data is stored in text files with the headers LANE, RNA_NAME, SEQ, and SEQCNT. I've been using x = "filename.txt" y = aggregate(x$SEQCNT, list(x$RNA_NAME), sum) write.table(y, "C:/path/filename.txt", sep="\t") to generate an output that I've analyzed using readDGE in the edgeR package: >RNA Targets = read.delim(&q...