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mzero
2011 Oct 04
2
Adonis and nmds help and questions for a novice.
...ary(MASS)
mydata <- read.table("ash_data.csv", header=TRUE, sep=",", row.names="Site")
envdata_fit <- read.table("ash_env.csv", header=TRUE, sep=",", row.names="Site")
#distance matrix of samples using bray curtis
d= bcdist(mydata, rmzero=FALSE)
And then using the distance matrix from this to use for adoins? Is this correct.
With this I have then run Adonis
results = adonis(d ~ wood, envdata_fit, permutations = 1000)
and get significant values to see if sig diff in diversity between wood and grass habitat.
However I have been r...